@article {68484, title = {Single-axonal organelle analysis method reveals new protein-motor associations.}, journal = {ACS Chem Neurosci}, volume = {4}, year = {2013}, month = {02/2013}, pages = {277-84}, abstract = {

Axonal transport of synaptic vesicle proteins is required to maintain neurons{\textquoteright} ability to communicate via synaptic transmission. Neurotransmitter-containing synaptic vesicles are assembled at synaptic terminals via highly regulated endocytosis of membrane proteins. These synaptic vesicle membrane proteins are synthesized in the cell body and transported to synapses in carrier vesicles that make their way down axons via microtubule-based transport utilizing kinesin molecular motors. Identifying the cargos that each kinesin motor protein carries from the cell bodies to the synapse is key to understanding both diseases caused by motor protein dysfunction and how synaptic vesicles are assembled. However, obtaining a bulk sample of axonal transport complexes from central nervous system (CNS) neurons to use for identification of their contents has posed a challenge to researchers. To obtain axonal carrier vesicles from primary cultured neurons, we fabricated a microfluidic chip designed to physically isolate axons from dendrites and cell bodies and developed a method to remove bulk axonal samples and label their contents. Synaptic vesicle protein carrier vesicles in these samples were labeled with antibodies to the synaptic vesicle proteins p38, SV2A, and VAMP2, and the anterograde axonal transport motor KIF1A, after which antibody overlap was evaluated using single-organelle TIRF microscopy. This work confirms a previously discovered association between KIF1A and p38 and shows that KIF1A also transports SV2A- and VAMP2-containing carrier vesicles.

}, keywords = {Animals, Axonal Transport, Cells, Cultured, Fluorescent Antibody Technique, Hippocampus, Kinesins, Membrane Glycoproteins, Mice, Microfluidic Analytical Techniques, Microscopy, Confocal, Nerve Tissue Proteins, Neurons, Organelles, Synaptic Vesicles, Synaptophysin, Transport Vesicles, Vesicle-Associated Membrane Protein 2, Vesicular Transport Proteins}, issn = {1948-7193}, doi = {10.1021/cn300136y}, author = {Sgro, Allyson E and Bajjalieh, Sandra M and Chiu, Daniel T} } @article {68486, title = {A high-throughput method for generating uniform microislands for autaptic neuronal cultures.}, journal = {J Neurosci Methods}, volume = {198}, year = {2011}, month = {06/2011}, pages = {230-5}, abstract = {

Generating microislands of culture substrate on coverslips by spray application of poly-d lysine is a commonly used method for culturing isolated neurons that form self (autaptic) synapses. This preparation has multiple advantages for studying synaptic transmission in isolation; however, generating microislands by spraying produces islands of non-uniform size and thus cultures vary widely in the number of islands containing single neurons. To address these problems, we developed a high-throughput method for reliably generating uniformly shaped microislands of culture substrate. Stamp molds formed of poly(dimethylsiloxane) (PDMS) were fabricated with arrays of circles and used to generate stamps made of 9.2\% agarose. The agarose stamps were capable of loading sufficient poly D-lysine and collagen dissolved in acetic acid to rapidly generate coverslips containing at least 64 microislands per coverslip. When hippocampal neurons were cultured on these coverslips, there were significantly more single-neuron islands per coverslip. We noted that single neurons tended to form one of three distinct neurite-arbor morphologies, which varied with island size and the location of the cell body on the island. To our surprise, the number of synapses per autaptic neuron did not correlate with arbor shape or island size, suggesting that other factors regulate the number of synapses formed by isolated neurons. The stamping method we report can be used to increase the number of single-neuron islands per culture and aid in the rapid visualization of microislands.

}, keywords = {Animals, Cell Communication, Cell Culture Techniques, Cells, Cultured, Dendrites, Hippocampus, Mice, Neurons, Synapses, Synaptic Transmission}, issn = {1872-678X}, doi = {10.1016/j.jneumeth.2011.04.012}, author = {Sgro, Allyson E and Nowak, Amy L and Austin, Naola S and Custer, Kenneth L and Allen, Peter B and Chiu, Daniel T and Bajjalieh, Sandra M} } @article {4927, title = {Synaptosomes as a platform for loading nanoparticles into synaptic vesicles.}, journal = {ACS Chemical Neuroscience}, volume = {2}, year = {2011}, month = {2011 May 18}, pages = {236-241}, abstract = {

Synaptosomes are intact, isolated nerve terminals that contain the necessary machinery to recycle synaptic vesicles via endocytosis and exocytosis upon stimulation. Here we use this property of synaptosomes to load quantum dots into synaptic vesicles. Vesicles are then isolated from the synaptosomes, providing a method to probe isolated, individual synaptic vesicles where each vesicle contains a single, encapsulated nanoparticle. This technique provided an encapsulation efficiency of \ 16\%, that is, \ 16\% of the vesicles contained a single quantum dot while the remaining vesicles were empty. The ability to load single nanoparticles into synaptic vesicles opens new opportunity for employing various nanoparticle-based sensors to study the dynamics of vesicular transporters.

}, issn = {1948-7193}, doi = {10.1021/cn200009n}, author = {Budzinski, Kristi L and Sgro, Allyson E and Fujimoto, Bryant S and Gadd, Jennifer C and Shuart, Noah G and Gonen, Tamir and Bajjaleih, Sandra M and Chiu, Daniel T} } @article {68487, title = {Droplet freezing, docking, and the exchange of immiscible phase and surfactant around frozen droplets.}, journal = {Lab Chip}, volume = {10}, year = {2010}, month = {07/2010}, pages = {1873-7}, abstract = {

This paper describes a platform for cooling microfluidic chips so as to freeze aqueous droplets flowing in oil. Using a whole-chip cooling chamber, we can control the ambient temperature surrounding a microfluidic chip and induce cooling and freezing inside the channels. When combined with a droplet generation and droplet docking chip, this platform allows for the facile freezing of droplets immobilized in resistance-based docks. Depending on the design and shape of the docks, the frozen droplets can either be trapped stably in the docks or be released because deformed non-frozen aqueous droplets turn spherical when frozen, and thus can become dislodged from the docks. Additionally, using this chamber and chip combination we are able to exchange immiscible phases and surfactants surrounding the frozen droplets. The materials and methods are inexpensive and easily accessible to microfluidics researchers, making this a simple addition to an existing microfluidic platform.

}, keywords = {Equipment Design, Equipment Failure Analysis, Freezing, Ice, Microfluidic Analytical Techniques, Phase Transition, Surface-Active Agents}, issn = {1473-0197}, doi = {10.1039/c001108h}, author = {Sgro, Allyson E and Chiu, Daniel T} } @article {68488, title = {Single-synapse ablation and long-term imaging in live C. elegans.}, journal = {J Neurosci Methods}, volume = {173}, year = {2008}, month = {09/2008}, pages = {20-6}, abstract = {

Synapses are individually operated, computational units for neural communication. To manipulate physically individual synapses in a living organism, we have developed a laser ablation technique for removing single synapses in live neurons in C. elegans that operates without apparent damage to the axon. As a complementary technique, we applied microfluidic immobilization of C. elegans to facilitate long-term fluorescence imaging and observation of neuronal development. With this technique, we directly demonstrated the existence of competition between developing synapses in the HSNL motor neuron.

}, keywords = {Animals, Axons, Behavior, Animal, Caenorhabditis elegans, Diagnostic Imaging, Laser Therapy, Microfluidic Analytical Techniques, Movement, Neurons, Synapses, Time Factors}, issn = {0165-0270}, doi = {10.1016/j.jneumeth.2008.05.007}, author = {Allen, Peter B and Sgro, Allyson E and Chao, Daniel L and Doepker, Byron E and Scott Edgar, J and Shen, Kang and Chiu, Daniel T} } @article {68489, title = {Thermoelectric manipulation of aqueous droplets in microfluidic devices.}, journal = {Anal Chem}, volume = {79}, year = {2007}, month = {07/2007}, pages = {4845-51}, abstract = {

This article describes a method for manipulating the temperature inside aqueous droplets, utilizing a thermoelectric cooler to control the temperature of select portions of a microfluidic chip. To illustrate the adaptability of this approach, we have generated an "ice valve" to stop fluid flow in a microchannel. By taking advantage of the vastly different freezing points for aqueous solutions and immiscible oils, we froze a stream of aqueous droplets that were formed on-chip. By integrating this technique with cell encapsulation into aqueous droplets, we were also able to freeze single cells encased in flowing droplets. Using a live-dead stain, we confirmed the viability of cells was not adversely affected by the process of freezing in aqueous droplets provided cryoprotectants were utilized. When combined with current droplet methodologies, this technology has the potential to both selectively heat and cool portions of a chip for a variety of droplet-related applications, such as freezing, temperature cycling, sample archiving, and controlling reaction kinetics.

}, keywords = {Cell Survival, Freezing, Kinetics, Lymphoma, B-Cell, Microfluidic Analytical Techniques, Mineral Oil, Solutions, Water}, issn = {0003-2700}, doi = {10.1021/ac062458a}, author = {Sgro, Allyson E and Allen, Peter B and Chiu, Daniel T} }