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2024
Clements J, Goina C, Hubbard PM, Kawase T, Olbris DJ, Otsuna H, Svirskas R, Rokicki K.  2024.  NeuronBridge: an intuitive web application for neuronal morphology search across large data sets. BMC Bioinformatics. 25:114.
Eckstein N, Bates AShakeel, Champion A, Du M, Yin Y, Schlegel P, Lu AKun-Yang, Rymer T, Finley-May S, Paterson T et al..  2024.  Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster. Cell. 187(10):2574-2594.e23.
Rubin GM, Aso Y.  2024.  New genetic tools for mushroom body output neurons in Drosophila. eLife.
Zhang K, Cossio P, Rangan A, Lucas B, Grigorieff N.  2024.  New Statistical Metric for Robust Target Detection in Cryo-EM Using 2DTM. bioRxiv.
Rangel-Sandoval C, Soula M, Li W-P, Castillo PE, Hunt DL.  2024.  NMDAR-mediated activation of pannexin1 channels contributes to the detonator properties of hippocampal mossy fiber synapses.. iScience. 27(5):109681.
Chen AB, Duque M, Wang VM, Dhanasekar M, Mi X, Rymbek A, Tocquer L, Narayan S, Prober D, Yu G et al..  2024.  Norepinephrine changes behavioral state via astroglial purinergic signaling. Science.
Villette V, Yang S, Valenti R, Macklin JJ, Bradley J, Mathieu B, Lombardini A, Podgorski K, Dieudonné S, Schreiter ER et al..  2024.  A novel rhodopsin-based voltage indicator for simultaneous two-photon optical recording with GCaMP in vivo. bioRxiv.
Takagi S, Abuin L, S. Stupski D, J. Arguello R, Prieto-Godino L, Stern DL, Cruchet S, Álvarez-Ocaña R, Wienecke CFR, van Breugel F et al..  2024.  Olfactory sensory neuron population expansions influence projection neuron adaptation and enhance odour tracking. Nat Commun. 15(1):7041.
Newman JP, Zhang J, Cuevas-López A, Miller NJ, Honda T, van der Goes M-SH, Leighton AH, Carvalho F, Lopes G, Lakunina A et al..  2024.  ONIX: a unified open-source platform for multimodal neural recording and perturbation during naturalistic behavior.. Nat Methods.
Clark DA, Fitzgerald JE.  2024.  Optimization in Visual Motion Estimation.. Annu Rev Vis Sci.
Yu Y, Gao SM, Guan Y, Hu P-W, Zhang Q, Liu J, Jing B, Zhao Q, Sabatini DM, Abu-Remaileh M et al..  2024.  Organelle proteomic profiling reveals lysosomal heterogeneity in association with longevity. eLife.
Cheong HSJ, Boone KN, Bennett MM, Salman F, Ralston JD, Hatch K, Allen RF, Phelps AM, Cook AP, Phelps JS et al..  2024.  Organization of an ascending circuit that conveys flight motor state in Drosophila.. Current Biology.
Yip MC, Gonzalez MM, Lewallen CF, Landry CR, Kolb I, Yang B, Stoy WM, Fong M-fai, Rowan MJM, Boyden ES et al..  2024.  Patch-walking: Coordinated multi-pipette patch clamp for efficiently finding synaptic connections. eLife. 13:RP97399.
Benedetti L, Fan R, Weigel AV, Moore AS, Houlihan PR, Kittisopikul M, Park G, Petruncio A, Hubbard PM, Pang S et al..  2024.  Periodic ER-plasma membrane junctions support long-range Ca signal integration in dendrites.. Cell.
Constable S, Ott CM, Lemire AL, White K, Xun Y, Lim A, Lippincott-Schwartz J, Mukhopadhyay S.  2024.  Permanent cilia loss during cerebellar granule cell neurogenesis involves withdrawal of cilia maintenance and centriole capping.. Proc Natl Acad Sci U S A. 121(52):e2408083121.
Ott CM, Constable S, Nguyen TM, White K, Lee W-CAllen, Lippincott-Schwartz J, Mukhopadhyay S.  2024.  Permanent deconstruction of intracellular primary cilia in differentiating granule cell neurons.. J Cell Biol.. 223(10):e202404038.
Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, J Bae A, Mitchell E, Mu S, Trautman ET et al..  2024.  Petascale pipeline for precise alignment of images from serial section electron microscopy.. Nature Communications. 15(1):289.
Johnson C, Guo M, Schneider MC, Su Y, Khuon S, Reiser N, Wu Y, La Riviere P, Shroff H.  2024.  Phase diversity-based wavefront sensing for fluorescence microscopy.. Optica. 11(6):806-820.
Gur D, Moore AS, Deis R, Song P, Wu X, Pinkas I, Deo C, Iyer N, Hess HF, Hammer JA et al..  2024.  The physical and cellular mechanism of structural color change in zebrafish.. Proc Natl Acad Sci U S A. 121(23):e2308531121.
Wong VC, Houlihan PR, Liu H, Walpita D, DeSantis MC, Liu Z, O'Shea EK.  2024.  Plasticity-induced actin polymerization in the dendritic shaft regulates intracellular AMPA receptor trafficking.. Elife. 13
Dai B, Yang J, Shroff H, La Riviere P.  2024.  Prediction of Cellular Identities from Trajectory and Cell Fate Information. arXiv.
Adjavon D-Y, Eckstein N, Bates AS, Jefferis GSXE, Funke J.  2024.  Quantitative Attributions with Counterfactuals. bioRxiv.
Zhou H, Hutchings J, Shiozaki M, Zhao X, Doolittle LK, Yang S, Yan R, Jean N, Riggi M, Yu Z et al..  2024.  Quantitative Spatial Analysis of Chromatin Biomolecular Condensates using Cryo-Electron Tomography. bioRxiv.
Wu Y, Lee M, A Mutlu S, Wang M, Reiner DJ.  2024.  RAL-1 signaling regulates lipid composition in .. MicroPubl Biol. 2024
Chen L, Su Y, Qian S, Zhou L, Han T, Wang C, Jiang R, Ding Z, Guo M, Liu Z.  2024.  Rapid Whole-Organ Characterization via Quantitative Light-Sheet Microscopy. Laser & Photonics Reviews. :2401177.