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Author Title Type [ Year(Asc)]
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2023
Cai C, Dong C, Friedrich J, Rozsa M, Pnevmatikakis EA, Giovannucci A.  2023.  FIOLA: an accelerated pipeline for fluorescence imaging online analysis.. Nature Methods. 20(9):1417-1425.
2021
Cai C, Friedrich J, Singh A, M Eybposh H, Pnevmatikakis EA, Podgorski K, Giovannucci A.  2021.  VolPy: Automated and scalable analysis pipelines for voltage imaging datasets.. PLoS Computational Biology. 17(4):e1008806.
2019
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..  2019.  Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
Giovannucci A, Friedrich J, Gunn P, Kalfon J, Brown BL, Koay SAnn, Taxidis J, Najafi F, Gauthier JL, Zhou P et al..  2019.  CaImAn an open source tool for scalable calcium imaging data analysis. eLife. 8
2018
Giovannucci A, Friedrich J, Gunn P, Kalfon J, Koay SAnn, Taxidis J, Najafi F, Gauthier JL, Zhou P, Tank DW et al..  2018.  CalmAn: An open source tool for scalable Calcium Imaging data Analysis. bioRxiv.
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..  2018.  Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLOS Computational Biology. 14(5):e1006157.
2017
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..  2017.  Community-based benchmarking improves spike inference from two-photon calcium imaging data.. PLoS Computational Biology. 14(5):e1006157.
Friedrich J, Yang W, Soudry D, Mu Y, Ahrens MB, Yuste R, Peterka DS, Paninski L.  2017.  Multi-scale approaches for high-speed imaging and analysis of large neural populations.. PLoS Computational Biology. 13(8):e1005685.