Biblio

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Author Title Type [ Year(Asc)]
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2025
Mohar B, Michel G, Wang Y-Z, Hernandez V, Grimm JB, Park J-Y, Patel R, Clarke M, Brown TA, Bergmann C et al..  2025.  DELTA: A method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning.. Nat Neurosci.
Dalangin R, Jia BZ, Qi Y, Aggarwal A, Sakoi K, Drobizhev M, Molina RS, Patel R, Abdelfattah AS, Zheng J et al..  2025.  Far-red fluorescent genetically encoded calcium ion indicators.. Nat Commun. 16(1):3318.
Podgorski K, Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie M, Maclennan B et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. Research Square.
Kolb I, Hasseman JP, Matsumoto A, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G, Zheng J, Patel R et al..  2025.  iGABASnFR2: Improved genetically encoded protein sensors of GABA. bioRxiv.
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Dilan TL, Ruetten VMS et al..  2025.  Live imaging of the extracellular matrix with a glycan-binding fluorophore.. Nat Methods.
Aggarwal A, Baker HA, Dürst CD, Chen I-W, de Chambrier P, Gonzales JMarie, Marvin JS, Vandal M, Lundberg T, Sakoi K et al..  2025.  A sensitive orange fluorescent calcium ion indicator for imaging neural activity. bioRxiv.
2024
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Grimm JB, Dilan TL et al..  2024.  Imaging the extracellular matrix in live tissues and organisms with a glycan-binding fluorophore. bioRxiv.
Farrants H, Shuai Y, Lemon WC, Hernandez CMonroy, Zhang D, Yang S, Patel R, Qiao G, Frei MS, Plutkis SE et al..  2024.  A modular chemigenetic calcium indicator for multiplexed in vivo functional imaging.. Nat Methods.
Bulumulla C, Walpita D, Iyer N, Eddison M, Patel R, Alcor D, Ackerman D, Beyene AG.  2024.  Synaptic Specializations at Dopamine Release Sites Orchestrate Efficient and Precise Neuromodulatory Signaling. bioRxiv.
2023
Zhang Y, Rozsa M, Liang Y, Bushey D, Wei Z, Zheng J, Reep D, Broussard GJoey, Tsang A, Tsegaye G et al..  2023.  Fast and sensitive GCaMP calcium indicators for imaging neural populations.. Nature.
Aggarwal A, Liu R, Chen Y, Ralowicz AJ, Bergerson SJ, Tomaska F, Mohar B, Hanson TL, Hasseman JP, Reep D et al..  2023.  Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission.. Nature Methods. 20(6)
Grimm JB, Tkachuk AN, Patel R, S. Hennigan T, Gutu A, Dong P, Gandin V, Osowski AM, Holland KL, Liu ZJ et al..  2023.  Optimized Red-Absorbing Dyes for Imaging and Sensing. Journal of the American Chemical Society.
2022
Banala S, Tkachuk AN, Patel R, Kumar P, Brown TA, Lavis LD.  2022.  2,7-Diaminobenzopyrylium Dyes Are Live-Cell Mitochondrial Stains2,7-Diaminobenzopyrylium Dyes Are Live-Cell Mitochondrial Stains. ACS Bio & Med Chem Au. 2(3):307-12.
2021
Grimm JB, Xie L, Casler JC, Patel R, Tkachuk AN, Falco N, Choi H, Lippincott-Schwartz J, Brown TA, Glick BS et al..  2021.  A general method to improve fluorophores using deuterated auxochromes.. JACS Au. 1(5):690-6.
2020
Zarowny L, Aggarwal A, Rutten VMS, Kolb I, Patel R, Huang H-Y, Chang Y-F, Phan T, Kanyo R, Ahrens MB et al..  2020.  Bright and high-performance genetically encoded Ca indicator based on mNeonGreen fluorescent protein.. ACS Sensors.
Sha F, Abdelfattah AS, Patel R, Schreiter ER.  2020.  Erasable labeling of neuronal activity using a reversible calcium marker.. eLife. 9
Grimm JB, Tkachuk AN, Xie L, Choi H, Mohar B, Falco N, Schaefer K, Patel R, Zheng Q, Liu Z et al..  2020.  A general method to optimize and functionalize red-shifted rhodamine dyes.. Nature Methods.
Mohr MAlexander, Bushey D, Aggarwal A, Marvin JS, Kim JJun, Marquez EJimenez, Liang Y, Patel R, Macklin JJ, Lee C-Y et al..  2020.  jYCaMP: an optimized calcium indicator for two-photon imaging at fiber laser wavelengths.. Nature Methods. 17(1):694-97.
2019
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..  2019.  Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
Dana H, Sun Y, Mohar B, Hulse BK, Kerlin AM, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R et al..  2019.  High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.. Nature Methods. 16(7):649-57.
2018
Shen Y, Dana H, Abdelfattah AS, Patel R, Shea J, Molina RS, Rawal B, Rancic V, Chang Y-F, Wu L et al..  2018.  A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.. BMC Biology. 16(1):9.
Dana H, Sun Y, Mohar B, Hulse B, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R, Macklin JJ et al..  2018.  High-performance GFP-based calcium indicators for imaging activity in neuronal populations and microcompartments.. bioRxiv.
2017
Grimm JB, Muthusamy AK, Liang Y, Brown TA, Lemon WC, Patel R, Lu R, Macklin JJ, Keller PJ, Ji N et al..  2017.  A general method to fine-tune fluorophores for live-cell and in vivo imaging.. Nature Methods. 14(10):987-994.
2016
Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, Tsegaye G, Holt GT, Hu A, Walpita D et al..  2016.  Sensitive red protein calcium indicators for imaging neural activity.. eLife. 5
2015
Paez-Segala MG, Sun MG, Shtengel G, Viswanathan S, Baird MA, Macklin JJ, Patel R, Allen JR, Howe ES, Piszczek G et al..  2015.  Fixation-resistant photoactivatable fluorescent proteins for CLEM.. Nature Methods. 12(3):215-8.