Fiji: an open-source platform for biological-image analysis.

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Nature Methods. 2012 Jul;9(7):676-82. doi: 10.1038/nmeth.2019
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Fiji: an open-source platform for biological-image analysis. Cardona LabSaalfeld Lab
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez J, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A
Note: Research in this publication was not performed at Janelia.
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Abstract

Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.

PMID: 22743772 [PubMed - indexed for MEDLINE]

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Janelia Authors

Stephan Saalfeld
Albert Cardona
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