Biblio

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Author Title Type [ Year(Desc)]
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2010
O’Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K.  2010.  Vibrissa-based object localization in head-fixed mice.. The Journal of Neuroscience. 30(5):1947-67.
2011
Gillette TA, Brown KM, Svoboda K, Liu Y, Ascoli GA.  2011.  DIADEMchallenge.org: a compendium of resources fostering the continuous development of automated neuronal reconstruction.. Neuroinformatics. 9(2-3):303-4.
Peron S, Svoboda K.  2011.  From cudgel to scalpel: toward precise neural control with optogenetics.. Nature Methods. 8(1):30-4.
Hooks BM, S Hires A, Zhang Y-X, Huber D, Petreanu L, Svoboda K, Shepherd GMG.  2011.  Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas.. PLoS Biology. 9(1):e1000572.
Mao T, Kusefoglu D, Hooks BM, Huber D, Petreanu L, Svoboda K.  2011.  Long-range neuronal circuits underlying the interaction between sensory and motor cortex.. Neuron. 72:111-23.
Nern A, Pfeiffer BD, Svoboda K, Rubin GM.  2011.  Multiple new site-specific recombinases for use in manipulating animal genomes.. Proceedings of the National Academy of Sciences of the United States of America. 108(34):14198-203.
Svoboda K.  2011.  The past, present, and future of single neuron reconstruction.. Neuroinformatics. 9(2-3):97-8.
2012
Petreanu L, Gutnisky DA, Huber D, Xu N-long, O’Connor DH, Tian L, Looger L, Svoboda K.  2012.  Activity in motor-sensory projections reveals distributed coding in somatosensation.. Nature. 489:299-303.
Clack NG, O’Connor DH, Huber D, Petreanu L, Hires A, Peron S, Svoboda K, Myers EW.  2012.  Automated tracking of whiskers in videos of head fixed rodents.. PLoS Computational Biology. 8:e1002591.
Zariwala HA, Borghuis BG, Hoogland TM, Madisen L, Tian L, De Zeeuw CI, Zeng H, Looger LL, Svoboda K, Chen T-W.  2012.  A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo.. The Journal of Neuroscience. 32:3131-41.
Xu N-long, Harnett MT, Williams SR, Huber D, O’Connor DH, Svoboda K, Magee JC.  2012.  Nonlinear dendritic integration of sensory and motor input during an active sensing task.. Nature. 492:247-51.
Akerboom J, Chen T-W, Wardill TJ, Marvin JS, Mutlu S, Caldero NCarreras, Esposti F, Borghuis BG, Sun XRichard, Gordus A et al..  2012.  Optimization of a GCaMP calcium indicator for neural activity imaging.. The Journal of Neuroscience. 32:13819-40.
Jacob V, Petreanu L, Wright N, Svoboda K, Fox K.  2012.  Regular spiking and intrinsic bursting pyramidal cells show orthogonal forms of experience-dependent plasticity in layer V of barrel cortex.. Neuron. 73(2):391-404.
Madisen L, Mao T, Koch H, Zhuo J-min, Berenyi A, Fujisawa S, Hsu Y-WA, Garcia AJ, Gu X, Zanella S et al..  2012.  A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.. Nature Neuroscience. 15(5):793-802.
2013
Pammer L, O’Connor DH, S Hires A, Clack NG, Huber D, Myers EW, Svoboda K.  2013.  The mechanical variables underlying object localization along the axis of the whisker.. The Journal of Neuroscience. 33(16):6726-41.
O’Connor DH, S Hires A, Guo ZV, Li N, Yu J, Sun Q-Q, Huber D, Svoboda K.  2013.  Neural coding during active somatosensation revealed using illusory touch.. Nature Neuroscience. 16(7):958-65.
Wardill TJ, Chen T-W, Schreiter ER, Hasseman JP, Tsegaye G, Fosque BF, Behnam R, Shields BC, Ramirez M, Kimmel BE et al..  2013.  A neuron-based screening platform for optimizing genetically-encoded calcium indicators.. PLoS One. 8:e77728.
Hooks BM, Mao T, Gutnisky DA, Yamawaki N, Svoboda K, Shepherd GMG.  2013.  Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex.. The Journal of Neuroscience. 33(2):748-60.
Hires SAndrew, Pammer L, Svoboda K, Golomb D.  2013.  Tapered whiskers are required for active tactile sensation.. eLife. 2:e01350.
Rah J-C, Bas E, Colonell J, Mishchenko Y, Karsh B, Fetter RD, Myers EW, Chklovskii DB, Svoboda K, Harris TD et al..  2013.  Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography.. Frontiers in Neural Circuits. 7:177.
Chen T-W, Wardill TJ, Sun Y, Pulvar SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V et al..  2013.  Ultrasensitive fluorescent proteins for imaging neuronal activity.. Nature. 499:295-300.
2014
Guo ZV, Li N, Huber D, Ophir E, Gutnisky D, Ting JT, Feng G, Svoboda K.  2014.  Flow of cortical activity underlying a tactile decision in mice.. Neuron. 81:179-94.
Sofroniew NJ, Cohen JD, Lee AK, Svoboda K.  2014.  Natural whisker-guided behavior by head-fixed mice in tactile virtual reality.. Journal of Neuroscience. 34(29):9537-50.
Guo ZV, S Hires A, Li N, O’Connor DH, Komiyama T, Ophir E, Huber D, Bonardi C, Morandell K, Gutnisky D et al..  2014.  Procedures for behavioral experiments in head-fixed mice.. PLoS One. 9:e88678.
Kuhlman SJ, O’Connor DH, Fox K, Svoboda K.  2014.  Structural plasticity within the barrel cortex during initial phases of whisker-dependent learning.. The Journal of Neuroscience. 34(17):6078-83.