Biblio

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Author Title Type [ Year(Asc)]
Filters: Author is Amat, Fernando  [Clear All Filters]
2018
McDole K, Guignard L, Amat F, Berger A, Malandain G, Royer LA, Turaga SC, Branson K, Keller PJ.  2018.  In toto imaging and reconstruction of post-implantation mouse development at the single-cell level.. Cell. 175(3):859-876.
Khairy K, Lemon WC, Amat F, Keller PJ.  2018.  A preferred curvature-based continuum mechanics framework for modeling embryogenesis.. Biophysical Journal. 114(2):267-77.
2016
Stegmaier J, Amat F, Lemon WC, McDole K, Wan Y, Teodoro G, Mikut R, Keller PJ.  2016.  Real-time three-dimensional cell segmentation in large-scale microscopy data of developing embryos.. Developmental Cell. 36(2):225-40.
Chhetri R, Amat F, Wan Y, Höckendorf B, Lemon WC, Keller PJ.  2016.  Whole-animal imaging with high spatio-temporal resolution.. Proceedings of SPIE. 9720:97200R.
2015
Amat F, Höckendorf B, Wan Y, Lemon WC, McDole K, Keller PJ.  2015.  Efficient processing and analysis of large-scale light-sheet microscopy data.. Nature Protocols. 10(11):1679-96.
Khairy K, Lemon WC, Amat F, Keller PJ.  2015.  Light sheet-based imaging and analysis of early embryogenesis in the fruit fly.. Methods in Molecular Biology. 1189:79-97.
Chhetri RK, Amat F, Wan Y, Höckendorf B, Lemon WC, Keller PJ.  2015.  Whole-animal functional and developmental imaging with isotropic spatial resolution. Nature Methods. 12(12):1171-8.
2014
Preibisch S, Amat F, Stamataki E, Sarov M, Singer RH, Myers E, Tomancak P.  2014.  Efficient Bayesian-based multiview deconvolution.. Nature Methods. 11:645-8.
Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ.  2014.  Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data.. Nature Methods. 11(9):951-8.
2013
Amat F, Keller PJ.  2013.  3D Haar-like elliptical features for object classification in microscopy.. International Symposium on Biomedical Imaging.
Amat F, Myers EW, Keller PJ.  2013.  Fast and robust optical flow for time-lapse microscopy using super-voxels.. Bioinformatics. 29(3):373-80.
Amat F, Keller PJ.  2013.  Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy.. Development, Growth and Differentiation. 55(4):563-78.
2012
Tomer R, Khairy K, Amat F, Keller PJ.  2012.  Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.. Nature Methods. 9(7):755-63.
2011
Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E.  2011.  Automated reconstruction of neuronal morphology based on local geometrical and global structural models.. Neuroinformatics. 9(2-3):247-61.
2010
Moussavi F, Heitz G, Amat F, Comolli LR, Koller D, Horowitz M.  2010.  3D segmentation of cell boundaries from whole cell cryogenic electron tomography volumes.. Journal of Structural Biology. 170(1):134-45.
Amat F, Castaño-Diez D, Lawrence A, Moussavi F, Winkler H, Horowitz M.  2010.  Alignment of cryo-electron tomography datasets.. Methods in Enzymology. 482:343-67.
Amat F, Comolli LR, Nomellini JF, Moussavi F, Downing KH, Smit J, Horowitz M.  2010.  Analysis of the intact surface layer of Caulobacter crescentus by cryo-electron tomography.. Journal of Bacteriology. 192(22):5855-65.
Miyamichi K, Amat F, Moussavi F, Wang C, Wickersham I, Wall NR, Taniguchi H, Tasic B, Z Huang J, He Z et al..  2010.  Cortical representations of olfactory input by trans-synaptic tracing.. Nature. 472(7342):191-6.
Amat F, Comolli LR, Moussavi F, Smit J, Downing KH, Horowitz M.  2010.  Subtomogram alignment by adaptive Fourier coefficient thresholding.. Journal of Structural Biology. 171(3):332-44.
2008
Amat F, Moussavi F, Comolli LR, Elidan G, Downing KH, Horowitz M.  2008.  Markov random field based automatic image alignment for electron tomography.. Journal of Structural Biology. 161(3):260-75.