Biblio

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Author Title Type [ Year(Asc)]
Filters: Author is Nawrocki, Eric P  [Clear All Filters]
2015
Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J et al..  2015.  Rfam 12.0: updates to the RNA families database.. Nucleic Acids Research. 43(Database issue):D130-7.
2014
Nawrocki EP.  2014.  Annotating functional RNAs in genomes using infernal.. Methods in Molecular Biology. 1097:163-97.
2013
Nawrocki EP, Eddy SR.  2013.  Computational identification of functional RNA homologs in metagenomic data.. RNA Biology. 10:1170-9.
Nawrocki EP, Eddy SR.  2013.  Infernal 1.1: 100-fold faster RNA homology searches.. Bioinformatics. 29(22):2933-5.
Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A.  2013.  Rfam 11.0: 10 years of RNA families.. Nucleic Acids Research. 41:D226-32.
2012
McDonald D, Price MN, Goodrich J, Nawrocki EP, Desantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P.  2012.  An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea.. The ISME Journal. 6(3):610-8.
2011
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR et al..  2011.  Rfam: Wikipedia, clans and the "decimal" release.. Nucleic Acids Research. 39(Database issue):D141-5.
Gardner PP, Barquist L, Bateman A, Nawrocki EP, Weinberg Z.  2011.  RNIE: genome-wide prediction of bacterial intrinsic terminators.. Nucleic Acids Research. 39(14):5845-52.
2009
Nawrocki EP, Kolbe DL, Eddy SR.  2009.  Infernal 1.0: inference of RNA alignments.. Bioinformatics. 25:1335-7.
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR et al..  2009.  Rfam: updates to the RNA families database.. Nucleic Acids Research. 37(Database issue):D136-40.
2007
Nawrocki EP, Eddy SR.  2007.  Query-dependent banding (QDB) for faster RNA similarity searches.. PLoS Computational Biology. 3(3):e56.