Biblio

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2016
Hubley R, Finn RD, Clements J, Eddy SR, Jones TA, Bao W, Smit AFA, Wheeler TJ.  2016.  The Dfam database of repetitive DNA families.. Nucleic Acids Research. 44(D1):D81-9.
2015
Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR.  2015.  HMMER web server: 2015 update.. Nucleic Acids Research.
2014
Wheeler TJ, Clements J, Finn RD.  2014.  Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models.. BMC Bioinformatics. 15:7.
2013
Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AFA, Finn RD.  2013.  Dfam: a database of repetitive DNA based on profile hidden Markov models.. Nucleic Acids Research. 41:D70-82.
Wheeler TJ, Eddy SR.  2013.  nhmmer: DNA homology search with profile HMMs.. Bioinformatics. 29:2487-9.