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2023
Malin-Mayor C, Hirsch P, Guignard L, McDole K, Wan Y, Lemon WC, Kainmueller D, Keller PJ, Preibisch S, Funke J.  2023.  Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.. Nature Biotechnology. 41(1):44-49.
Wolf S, Lalit M, McDole K, Funke J.  2023.  Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images. 2023 IEEE/CVF International Conference on Computer Vision (ICCV).
2022
Malin-Mayor C, Hirsch P, Guignard L, McDole K, Wan Y, Lemon WC, Kainmueller D, Keller PJ, Preibisch S, Funke J.  2022.  Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.. Nature Biotechnology.
2021
Tyser RCV, Ibarra-Soria X, McDole K, Jayaram SA, Godwin J, van den Brand TAH, Miranda AMA, Scialdone A, Keller PJ, Marioni JC et al..  2021.  Characterization of a common progenitor pool of the epicardium and myocardium.. Science.
Stelzer EHK, Strobl F, Chang B-J, Preusser F, Preibisch S, McDole K, Fiolka R.  2021.  Light sheet fluorescence microscopy.. Nature Reviews Methods Primers. 1(1)
2020
Lemon WC, McDole K.  2020.  Live-cell imaging in the era of too many microscopes.. Current Opinion in Cell Biology. 66:34-42.
2019
Wan Y, McDole K, Keller PJ.  2019.  Light-sheet microscopy and its potential for understanding developmental processes.. Annual Review of Cell and Developmental Biology. 35:655-81.
2018
McDole K, Guignard L, Amat F, Berger A, Malandain G, Royer LA, Turaga SC, Branson K, Keller PJ.  2018.  In toto imaging and reconstruction of post-implantation mouse development at the single-cell level.. Cell. 175(3):859-876.
2016
Stegmaier J, Amat F, Lemon WC, McDole K, Wan Y, Teodoro G, Mikut R, Keller PJ.  2016.  Real-time three-dimensional cell segmentation in large-scale microscopy data of developing embryos.. Developmental Cell. 36(2):225-40.
2015
Amat F, Höckendorf B, Wan Y, Lemon WC, McDole K, Keller PJ.  2015.  Efficient processing and analysis of large-scale light-sheet microscopy data.. Nature Protocols. 10(11):1679-96.
Lemon WC, Pulver SR, Höckendorf B, McDole K, Branson KM, Freeman J, Keller PJ.  2015.  Whole-central nervous system functional imaging in larval Drosophila.. Nature Communications. 6:7924.
2014
Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ.  2014.  Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data.. Nature Methods. 11(9):951-8.