Biblio

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2025
Sendra M, McDole K, Hourcade Jde Dios, Temiño S, Raiola M, Guignard L, Keller PJ, Domínguez JN, Torres M.  2025.  Myocardium and endocardium of the early mammalian heart tube arise from independent multipotent lineages specified at the primitive streak. Dev Cell.
2023
Malin-Mayor C, Hirsch P, Guignard L, McDole K, Wan Y, Lemon WC, Kainmueller D, Keller PJ, Preibisch S, Funke J.  2023.  Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.. Nature Biotechnology. 41(1):44-49.
Wolf S, Lalit M, McDole K, Funke J.  2023.  Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images. 2023 IEEE/CVF International Conference on Computer Vision (ICCV).
2022
Malin-Mayor C, Hirsch P, Guignard L, McDole K, Wan Y, Lemon WC, Kainmueller D, Keller PJ, Preibisch S, Funke J.  2022.  Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.. Nature Biotechnology.
2021
Tyser RCV, Ibarra-Soria X, McDole K, Jayaram SA, Godwin J, van den Brand TAH, Miranda AMA, Scialdone A, Keller PJ, Marioni JC et al..  2021.  Characterization of a common progenitor pool of the epicardium and myocardium.. Science.
Stelzer EHK, Strobl F, Chang B-J, Preusser F, Preibisch S, McDole K, Fiolka R.  2021.  Light sheet fluorescence microscopy.. Nature Reviews Methods Primers. 1(1)
2020
Lemon WC, McDole K.  2020.  Live-cell imaging in the era of too many microscopes.. Current Opinion in Cell Biology. 66:34-42.
2019
Wan Y, McDole K, Keller PJ.  2019.  Light-sheet microscopy and its potential for understanding developmental processes.. Annual Review of Cell and Developmental Biology. 35:655-81.
2018
McDole K, Guignard L, Amat F, Berger A, Malandain G, Royer LA, Turaga SC, Branson K, Keller PJ.  2018.  In toto imaging and reconstruction of post-implantation mouse development at the single-cell level.. Cell. 175(3):859-876.
2016
Stegmaier J, Amat F, Lemon WC, McDole K, Wan Y, Teodoro G, Mikut R, Keller PJ.  2016.  Real-time three-dimensional cell segmentation in large-scale microscopy data of developing embryos.. Developmental Cell. 36(2):225-40.
2015
Amat F, Höckendorf B, Wan Y, Lemon WC, McDole K, Keller PJ.  2015.  Efficient processing and analysis of large-scale light-sheet microscopy data.. Nature Protocols. 10(11):1679-96.
Lemon WC, Pulver SR, Höckendorf B, McDole K, Branson KM, Freeman J, Keller PJ.  2015.  Whole-central nervous system functional imaging in larval Drosophila.. Nature Communications. 6:7924.
2014
Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ.  2014.  Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data.. Nature Methods. 11(9):951-8.