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2019
Sugino K, Clark E, Schulmann A, Shima Y, Wang L, Hunt DL, Hooks BM, Traenkner D, Chandrashekar J, Picard S et al..  2019.  Mapping the transcriptional diversity of genetically and anatomically defined cell populations in the mouse brain.. Elife. 8
2018
Hooks BM, Papale AE, Paletzki R, Feroze M, Eastwood BS, Couey JJ, Winnubst J, Chandrashekar J, Gerfen CR.  2018.  Cell type-specific variation of somatotopic precision across corticostriatal projections. . bioRxiv.
Hooks BM, Papale AE, Paletzki RF, Feroze MW, Eastwood BS, Couey JJ, Winnubst J, Chandrashekar J, Gerfen CR.  2018.  Topographic precision in sensory and motor corticostriatal projections varies across cell type and cortical area.. Nature Communications. 9(1):3549.
2015
Hooks BM, Lin JY, Guo C, Svoboda K.  2015.  Dual-channel circuit mapping reveals sensorimotor convergence in the primary motor cortex.. The Journal of Neuroscience. 35(10):4418-26.
2014
Wang X, Hooks BM, Sun Q-Q.  2014.  Thorough GABAergic innervation of the entire axon initial segment revealed by an optogenetic 'laserspritzer'.. Journal of Physiology - London. 592(Pt 19):4257-76.
2013
Yang W, Carrasquillo Y, Hooks BM, Nerbonne JM, Burkhalter A.  2013.  Distinct balance of excitation and inhibition in an interareal feedforward and feedback circuit of mouse visual cortex.. The Journal of Neuroscience. 33(44):17373-84.
Hooks BM, Mao T, Gutnisky DA, Yamawaki N, Svoboda K, Shepherd GMG.  2013.  Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex.. The Journal of Neuroscience. 33(2):748-60.
2012
Madisen L, Mao T, Koch H, Zhuo J-min, Berenyi A, Fujisawa S, Hsu Y-WA, Garcia AJ, Gu X, Zanella S et al..  2012.  A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.. Nature Neuroscience. 15(5):793-802.
2011
Mao T, Kusefoglu D, Hooks BM, Huber D, Petreanu L, Svoboda K.  2011.  Long-range neuronal circuits underlying the interaction between sensory and motor cortex.. Neuron. 72:111-23.
2010
Suter BA, O'Connor T, Iyer V, Petreanu LT, Hooks BM, Kiritani T, Svoboda K, Shepherd GMG.  2010.  Ephus: multipurpose data acquisition software for neuroscience experiments.. Front Neural Circuits. 4:100.
Komiyama T, Sato TR, O’Connor DH, Zhang Y-X, Huber D, Hooks BM, Gabitto M, Svoboda K.  2010.  Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice.. Nature. 464(7292):1182-6.