Biblio

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Author Title Type [ Year(Asc)]
Filters: Author is Funke, Jan  [Clear All Filters]
2021
Sheridan A, Nguyen T, Deb D, Lee W-CAllen, Saalfeld S, Turaga S, Manor U, Funke J.  2021.  Local Shape Descriptors for Neuron Segmentation. bioRxiv.
Maniates-Selvin JT, Hildebrand DGrant Colb, Graham BJ, Kuan AT, Thomas LA, Nguyen T, Buhmann J, Azevedo AW, Shanny BL, Funke J et al..  2021.  Reconstruction of motor control circuits in adult Drosophila using automated transmission electron microscopy. Cell. 184(3)
Lundberg E, Funke J, Uhlmann V, Gerlich D, Walter T, Carpenter A, Coehlo LPedro.  2021.  Which image-based phenotypes are most promising for using AI to understand cellular functions and why? Cell Systems. 12(5):384-387.
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, C Xu S et al..  2021.  Whole-cell organelle segmentation in volume electron microscopy.. Nature. 599(7883):141-46.
2020
Kuan AT, Phelps JS, Thomas LA, Nguyen TM, Han J, Chen C-L, Azevedo AW, Tuthill JC, Funke J, Cloetens P et al..  2020.  Dense neuronal reconstruction through X-ray holographic nano-tomography.. Nature Neuroscience. 23(12):1637-43.
Wolf S, Hamprecht FA, Funke J.  2020.  Inpainting Networks Learn to Separate Cells in Microscopy Images. British Machine Vision Conference.
2019
Funke J, Tschopp FD, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC.  2019.  Large scale image segmentation with structured loss based deep learning for connectome reconstruction.. IEEE Transactions on Pattern Analysis and Machine Intelligence. 41(7):1669-80.
2018
Plaza SM, Funke J.  2018.  Analyzing image segmentation for connectomics.. Frontiers in Neural Circuits. 12:102.
Heinrich L, Funke J, Pape C, Nunez-Iglesias J, Saalfeld S.  2018.  Synaptic cleft segmentation in non-isotropic volume electron microscopy of the complete Drosophila brain.. Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. :317-25.
Buhmann J, Krause R, Lentini RCeballos, Eckstein N, Cook M, Turaga SC, Funke J.  2018.  Synaptic partner prediction from point annotations in insect brains.. MICCAI 2018: Medical Image Computing and Computer Assisted Intervention.
2017
Funke J, Zhang C, Pietzsch T, Ballester MAGonzalez, Saalfeld S.  2017.  The candidate multi-cut for cell segmentation.. 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M.  2017.  TED: A Tolerant Edit Distance for segmentation evaluation.. Methods. 115:119-27.
2016
Tschopp F, Martel JNP, Turaga SC, Cook M, Funke J.  2016.  Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems.. IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro.
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M.  2016.  Structured learning of assignment models for neuron reconstruction to minimize topological errors.. IEEE 13th International Symposium on Biomedical Imaging (ISBI). :607-11.
2015
Kreshuk A, Funke J, Cardona A, Hamprecht FA.  2015.  Who is talking to whom: Synaptic partner detection in anisotropic volumes of insect brain.. Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015. :661-8.
2012
Funke J, Andres B, Hamprecht F, Cardona A, Cook M.  2012.  Efficient automatic 3D-reconstruction of branching neurons from EM data.. Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on.