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Author Title Type [ Year(Desc)]
Filters: Author is Bogovic, John A  [Clear All Filters]
2015
Yang Z, Ye C, Bogovic JA, Carass A, Jedynak BM, Ying SH, Prince JL.  2015.  Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease.. NeuroImage. 127:435-44.
Hanslovsky P, Bogovic JA, Saalfeld S.  2015.  Post-acquisition image based compensation for thickness variation in microscopy section series.. IEEE International Symposium on Biomedical Imaging. :507-11.
2016
Hanslovsky P, Bogovic JA, Saalfeld S.  2016.  Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy.. Bioinformatics (Oxford, England).
Bogovic JA, Hanslovsky P, Wong AM, Saalfeld S.  2016.  Robust registration of calcium images by learned contrast synthesis.. IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro.
2017
Heinrich L, Bogovic JA, Saalfeld S.  2017.  Deep learning for isotropic super-resolution from non-isotropic 3D electron microscopy.. International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2017. MICCAI 2017. Lecture Notes in Computer Science. 10434:arXiv:1706.03142.
2018
Zheng Z, J Lauritzen S, Perlman E, Robinson CG, Nichols M, Milkie DE, Torrens O, Price J, Fisher CB, Sharifi N et al..  2018.  A complete electron microscopy volume of the brain of adult Drosophila melanogaster.. Cell. 174(3):730-43.
Bogovic JA, Otsuna H, Heinrich L, Ito M, Jeter J, Meissner GW, Nern A, Colonell J, Malkesman O, Saalfeld S.  2018.  An unbiased template of the Drosophila brain and ventral nerve cord.. bioRxiv.
2019
Gao R, Asano SM, Upadhyayula S, Pisarev I, Milkie DE, Liu T-L, Singh V, Graves AR, Huynh GH, Zhao Y et al..  2019.  Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.. Science (New York, N.Y.). 363(6424):eaau8302.
2020
Hoffman DP, Shtengel G, C Xu S, Campbell KR, Freeman M, Wang L, Milkie DE, H Pasolli A, Iyer N, Bogovic JA et al..  2020.  Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells.. Science. 367(6475)
Bogovic JA, Otsuna H, Heinrich L, Ito M, Jeter J, Meissner G, Nern A, Colonell J, Malkesman O, Ito K et al..  2020.  An unbiased template of the Drosophila brain and ventral nerve cord.. PLoS One. 15(12):e0236495.
2023
Thuma TBT, Bogovic JA, Gunton KB, Jimenez H, Negreiros B, Pulido JS.  2023.  The big warp: Registration of disparate retinal imaging modalities and an example overlay of ultrawide-field photos and en-face OCTA images.. PLoS One. 18(4):e0284905.
Rzepka N, Bogovic JA, Moore JA.  2023.  Toward scalable reuse of vEM data: OME-Zarr to the rescue.. Methods in Cell Biology. 177:359-387.
Heinrich L, Patton W, Bennett D, Ackerman D, Park G, Bogovic JA, Eckstein N, Petruncio A, Clements J, Pang S et al..  2023.  Towards Generalizable Organelle Segmentation in Volume Electron Microscopy.. Microscopy and Microanalysis. 29(Supplement_1):975.
2024
Allier C, Schneider MC, Innerberger M, Heinrich L, Bogovic JA, Saalfeld S.  2024.  Decomposing heterogeneous dynamical systems with graph neural networks. arXiv.