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2024
Amsalem O, Inagaki H, Yu J, Svoboda K, Darshan R.  2024.  Sub-threshold neuronal activity and the dynamical regime of cerebral cortex.. Nat Commun. 15(1):7958.
Hadas R, Rubinstein H, Mittnenzweig M, Mayshar Y, Ben-Yair R, Cheng S, Aguilera-Castrejon A, Reines N, Orenbuch A-H, Lifshitz A et al..  2024.  Temporal BMP4 effects on mouse embryonic and extraembryonic developmentAbstract. Nature. 634(8034):652-661.
Hermundstad AM, Młynarski WF.  2024.  A theory of rapid behavioral inferences under the pressure of time. PRX Life. 4
Chandler T, Guo M, Su Y, Chen J, Wu Y, Liu J, Agashe A, Fischer RS, Mehta SB, Kumar A et al..  2024.  Three-dimensional spatio-angular fluorescence microscopy with a polarized dual-view inverted selective-plane illumination microscope (pol-diSPIM). bioRxiv.
Pérez-Chávez I, Koberstein JN, Pueyo JMalo, Gilglioni EH, Vertommen D, Baeyens N, Ezeriņa D, Gurzov EN, Messens J.  2024.  Tracking fructose 1,6-bisphosphate dynamics in liver cancer cells using a fluorescent biosensor. iScience. 27:111336.
Stringer C, Pachitariu M.  2024.  Transformers do not outperform Cellpose. bioRxiv.
Kumar P, Gutu A, Waring A, Brown TA, Lavis LD, Tebo AG.  2024.  Transforming chemigenetic bimolecular fluorescence complementation systems into chemical dimerizers using chemistry.. bioRxiv.
Renganathan B, Moore AS, Yeo W-H, Petruncio A, Ackerman D, Wiegel A, Team CM, H. Pasolli A, C. Xu S, Hess HF et al..  2024.  Transport and Organization of Individual Vimentin Filaments Within Dense Networks Revealed by Single Particle Tracking and 3D FIB-SEM. bioRxiv.
Chadwick SR, Stack-Couture S, Berg MD, Di Gregorio S, Lung B, Genereaux J, Moir RD, Brandl CJ, Willis IM, Snapp EL et al..  2024.  TUDCA modulates drug bioavailability to regulate resistance to acute ER stress in Saccharomyces cerevisiae. Mol Biol Cell. :mbcE24040147.
Kivimaki SE, Dempsey S, Tani JM, Camper C, Hicklin IK, Blaby-Haas CE, Brown AM, Melville S.  2024.  Type IV pili-associated secretion of a biofilm matrix protein from Clostridium perfringens that forms intermolecular isopeptide bonds. bioRxiv.
Ye Z, Shelton AM, Shaker JR, Boussard JM, Colonell J, Birman D, Manavi S, Chen S, Windolf C, Hurwitz C et al..  2024.  Ultra-high density electrodes improve detection, yield, and cell type identification in neuronal recordings. bioRxiv.
Ott CM, Torres R, Kuan T-S, Kuan A, Buchanan JA, Elabbady L, Seshamani S, Bodor AL, Collman F, Bock DD et al..  2024.  Ultrastructural differences impact cilia shape and external exposure across cell classes in the visual cortex. Curr Biol.
Aggarwal A, Chan J, Waring AK, Negrean A, Marvin JS, Podgorski K, Looger LL.  2024.  Visualization of Glutamatergic Neurotransmission in Diverse Model Organisms with Genetically Encoded Indicators. New Technologies for Glutamate Interaction: Neurons and Glia. 2780:3–34.
Vaxenburg R, Siwanowicz I, Merel J, Robie AA, Morrow C, Novati G, Stefanidi Z, Both G-J, Card GM, Reiser MB et al..  2024.  Whole-body simulation of realistic fruit fly locomotion with deep reinforcement learning. bioRxiv.
Wang Q, Cardona A, Zlatic M, Vogelstein JT, Priebe CE.  2024.  Why do we have so many excitatory neurons? bioRxiv.
Lin H-T, Siwanowicz I, Leonardo A.  2024.  Wireless recordings from dragonfly target detecting neurons during prey interception flight. bioRxiv.
Hao S, Lee YJin, Goldfajn NBenhamou, Flores E, Liang J, Fuehrer H, Demmerle J, Lippincott-Schwartz J, Liu Z, Sukenik S et al..  2024.  YAP condensates are highly organized hubs. iScience. :109927.
2025
Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al..  2025.  Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.
Squires JR, Sun Y, Hoffmann AD, Zhang Y, Minor AC, Singh A, Scholten D, Ding H, Mao C, Platanias LC et al..  2025.  Abstract B049: Deep learning enables identification of cell types and clusters (iCTC) in immune tumor ecosystems for prognostic assessment in cancer. Clinical Cancer Research. 31:B049-B049.
Januszewski M, Templier T, Hayworth KJeffrey, Peale D, Hess H.  2025.  Accelerating neuron reconstruction with PATHFINDER. bioRxiv.
Yu Z, Gutu A, Kim N, O’Shea EK.  2025.  Activity-dependent synapse elimination requires caspase-3 activation. eLife.
Schretter CE.  2025.  Aggression across sexes from a contextual- and circuit-based perspective.. Curr Opin Neurobiol. 93:103071.
Shtengel G, Qiu W, Aaron J, Crowe AS, Polilov AA, Karkali K, Bleck CKE, Hess HH.  2025.  Alternating angle milling suppresses streaking artifacts in FIB-SEM imaging. bioRxiv.
Liu H, Squires J, Sun Y, Hoffmann ADaniel, Zhang Y, Platanias LC, Gradishar WJohn, Cristofanilli M, Stringer C.  2025.  Analysis of deep learning for automated recognition of immune cells interacting with CTCs for prognostic assessment in cancer.. Journal of Clinical Oncology. 43:e13028-e13028.
Charvat AF, Mason-Chalmers K, Grabinska-Rogala A, Shivakumar S, Gale-Day Z, Wu T, Millbern Z, Grimm J, Carroll EC, Nilsson P et al..  2025.  Aurora 2.0: A fluorogenic dye library for expanding the capability of protein-adaptive Differential Scanning Fluorimetry (paDSF).. SLAS Discov. :100259.