Biblio

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2025
Roche B, Claudi B, Cunrath O, Bleck CKE, Antelo-Varela M, Li J, Bumann D.  2025.  A Salmonella subset exploits erythrophagocytosis to subvert SLC11A1-imposed iron deprivation. Cell Host & Microbe. 33:632-642.e4.
Preibisch S, Innerberger M, León-Periñán D, Karaiskos N, Rajewsky N.  2025.  Scalable image-based visualization and alignment of spatial transcriptomics datasets. Cell Syst.
Deutsch D, Matsliah A, Wang K, Dorkenwald S, Mondal A, Burke A, Hebditch J, Gager J, Yu S-C, Sterling A et al..  2025.  Sexually-dimorphic neurons in the Drosophila whole-brain connectome. Research Square.
Chai CM, Morrow C, Parikh DD, von Reyn CR, Leonardo A, Card GM.  2025.  Shorter-duration escapes driven by Drosophila giant interneurons promote survival during predation. Proc Biol Sci.
Lustig B, Wang Y, Romani S, Pastalkova E, Lee AK.  2025.  Signatures of remote planning in hippocampal replay. bioRxiv.
Du F, Núñez-Ochoa MAngel, Pachitariu M, Stringer C.  2025.  A simplified minimodel of visual cortical neurons. Nat Commun.
Bibby S, Jung J, Low YShang, Amarilla AA, Newton ND, Scott CAP, Balk J, Ting YTian, Freney ME, Liang B et al..  2025.  A single residue in the yellow fever virus envelope protein modulates virion architecture and antigenicity.. Nat Commun. 16(1):8449.
Uchigashima M, Iguchi R, Fujii K, Shiku K, Kumar P, Liu X, Isogai M, Hoshino C, Abe M, Nozumi M et al..  2025.  Single-cell synaptome mapping of endogenous protein subpopulations in mammalian brain.. Nat Commun. 16(1):9705.
Ehrhardt E, Whitehead SC, Namiki S, Minegishi R, Siwanowicz I, Feng K, Otsuna H, Team FLProject, Meissner GW, Stern D et al..  2025.  Single-cell type analysis of wing premotor circuits in the ventral nerve cord of Drosophila melanogaster. eLife.
Wong VC, Walpita D, Liu Z, O'Shea EK.  2025.  Single-Particle Tracking of AMPA Receptor-Containing Vesicles. Bio-protocol. 15(11)
Furman D, Auwerx J, Bulteau A-L, Church G, Couturaud V, Crabbe L, Davies KJA, Decottignies A, Gladyshev VN, Kennedy BK et al..  2025.  Skin health and biological aging.. Nat Aging.
Koukuntla S, DeWeese T, Cheng A, Mildren R, Lawrence A, Graves AR, Colonell J, Harris TD, Charles AS.  2025.  SLAy-ing oversplitting errors in high-density electrophysiology spike sorting. bioRxiv.
Lee SSoo, Liu Q, Cheng AHR, Kim DWon, Boudreau DM, Mehta A, Keles MF, Fejfer R, Palmer I, Park KH et al..  2025.  Sleep need-dependent plasticity of a thalamic circuit promotes homeostatic recovery sleep.. Science. 388(6753):eadm8203.
Zhang Q, Grødem S, Gracias A, Lensjø KK, Fyhn M, Stringer C, Pachitariu M.  2025.  Spatial predictive coding in visual cortical neurons. bioRxiv.
Voigts J, Kanitscheider I, Miller NJ, Toloza EHS, Newman JP, Fiete IR, Harnett MT.  2025.  Spatial reasoning via recurrent neural dynamics in mouse retrosplenial cortex. Nat Neurosci. 28(6):1293-1299.
Qian X, Coleman K, Jiang S, Kriz AJ, Marciano JH, Luo C, Cai C, Manam MDevi, Caglayan E, Otani A et al..  2025.  Spatial transcriptomics reveals human cortical layer and area specification. Nature.
Meissner GW, Vannan A, Jeter J, Close K, Depasquale GM, Dorman Z, Forster K, Beringer JAnne, Gibney TV, Hausenfluck JH et al..  2025.  A split-GAL4 driver line resource for Drosophila neuron types.
Smeets K, Hesselink LW, Marquez-Legorreta E, Fleishman GM, Eddison M, Tillberg PW, Ahrens MB, Englitz B.  2025.  SpotDMix: informed mRNA transcript assignment using mixture models. bioRxiv.
Natrajan M, Fitzgerald JE.  2025.  Stability through plasticity: Finding robust memories through representational drift.. Proc Natl Acad Sci USA. 122(45):e2500077122.
Lavis L, Lavis C.  2025.  Stars by the pocketful. ACS Central Science.
Blanc A, Laurent F, Barbier-Chebbah A, Van Assel H, Cocanougher BT, Jones BMW, Hague P, Zlatic M, Chikhi R, Vestergaard CL et al..  2025.  Statistical signature of subtle behavioral changes in large-scale assays.. PLoS Comput Biol. 21(4):e1012990.
Cuevas AR, Tillman MC, Wang MC, Ortlund EA.  2025.  Structural dynamics and binding of Caenorhabditis elegans lifespan-extending lipid binding protein-3 to polyunsaturated fatty acids.. Protein Sci. 34(1):e5249.
Yarger AM, Maeda M, Siwanowicz I, Kajiyama H, Walker SM, Bomphrey RJ, Lin H-T.  2025.  Structural dynamics and neural representation of wing deformation.. Proc Natl Acad Sci USA. 122(46):e2518032122.
Lau JYN, Fitzgerald JE, Bianco IH.  2025.  Supraspinal commands have a modular organization that is behavioral context specific.. Curr Biol.
Yu P, Lian Y, Xie E, Zuleger CL, Albertini RJ, Albertini MR, Newton MA.  2025.  Surrogate selection oversamples expanded T cell clonotypes. The Annals of Applied Statistics. 19:1884–1907.