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2023
Aso Y, Yamada D, Bushey D, Hibbard K, Sammons M, Otsuna H, Shuai Y, Hige T.  2023.  Neural circuit mechanisms for transforming learned olfactory valences into wind-oriented movement. eLife.
Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu S-C, McKellar CE, Lin A, Costa M, Eichler K, Yin Y et al..  2023.  Neuronal wiring diagram of an adult brain.. bioRxiv.
Fortunato C, Bennasar-Vázquez J, Park J, Chang JC, Miller LE, Dudman JT, Perich MG, Gallego JA.  2023.  Nonlinear manifolds underlie neural population activity during behaviour.. bioRxiv.
Wang ZAiden, Chen S, Liu Y, Liu D, Svoboda K, Li N, Druckmann S.  2023.  Not everything, not everywhere, not all at once: a study of brain-wide encoding of movement. bioRxiv.
Moore J, Basurto-Lozada D, Besson S, Bogovic J, Brown EM, Burel J-M, de Medeiros G, Diel EE, Gault D, Ghosh SS et al..  2023.  OME-Zarr: a cloud-optimized bioimaging file format with international community support.. Histochemistry and Cell Biology. 160(3):223-251.
Grimm JB, Tkachuk AN, Patel R, S. Hennigan T, Gutu A, Dong P, Gandin V, Osowski AM, Holland KL, Liu ZJ et al..  2023.  Optimized Red-Absorbing Dyes for Imaging and Sensing. Journal of the American Chemical Society.
Cheong HSJ, Boone KN, Bennett MM, Salman F, Ralston JD, Hatch K, Allen RF, Phelps AM, Cook AP, Phelps JS et al..  2023.  Organization of an Ascending Circuit that Conveys Flight Motor State. bioRxiv.
Sun W, Advani M, Spruston N, Saxe A, Fitzgerald JE.  2023.  Organizing memories for generalization in complementary learning systems.. Nature Neuroscience. 26(8):1438-1448.
Wong KKin Lam, Li T, Fu T-M, Liu G, Lyu C, Kohani S, Xie Q, Luginbuhl DJ, Upadhyayula S, Betzig E et al..  2023.  Origin of wiring specificity in an olfactory map revealed by neuron type-specific, time-lapse imaging of dendrite targeting.. eLife. 12
Peng X, Clements J, Jiang Z, Preibisch S, Li J.  2023.  PEELing: an integrated and user-centric platform for cell-surface proteomics analysis. bioRxiv.
Bonello TT, Cai D, Fletcher GC, Wiengartner K, Pengilly V, Lange KS, Liu Z, Lippincott-Schwartz J, Kavran JM, Thompson BJ.  2023.  Phase separation of Hippo signalling complexes.. EMBO Journal. 42(6):e112863.
Birman D, Yang KJ, West SJ, Karsh B, Browning Y, Laboratory theInternatio, Siegle JH, Steinmetz NA.  2023.  Pinpoint: trajectory planning for multi-probe electrophysiology and injections in an interactive web-based 3D environment. bioRxiv.
Guardia CM, Kane E, Tebo AG, Sanders AAWM, Kaya D, Grogan KE.  2023.  The power of peer networking for improving STEM faculty job applications: a successful pilot programme.. Proceedings. Biological Sciences. 290(1997):20230124.
Covert I, Gala R, Wang T, Svoboda K, Sümbül U, Lee S-I.  2023.  Predictive and robust gene selection for spatial transcriptomics.. Nature Communications. 14(1):2091.
Safaie M, Chang JC, Park J, Miller LE, Dudman JT, Perich MG, Gallego JA.  2023.  Preserved neural dynamics across animals performing similar behaviour.. Nature.
Deng D, Guan Y, Wang B, Zheng H, Mutlu ASena, Wang MCarla.  2023.  Quantitative Profiling of Lysosomal pH Heterogeneity using Fluorescence Lifetime Imaging Microscopy. bioRxiv.
Stringer C, Zhong L, Syeda A, Du F, Pachitariu M.  2023.  Rastermap: a discovery method for neural population recordings. bioRxiv.
Shen Y, Wen Y, Sposini S, Vishwanath AAmrapali, Abdelfattah AS, Schreiter ER, M Lemieux J, de Juan-Sanz J, Perrais D, Campbell RE.  2023.  Rational Engineering of an Improved Genetically Encoded pH Sensor Based on Superecliptic pHluorin.. ACS Sensors. 8(8):3014-3022.
Qiao C, Li D, Liu Y, Zhang S, Liu K, Liu C, Guo Y, Jiang T, Fang C, Li N et al..  2023.  Rationalized deep learning super-resolution microscopy for sustained live imaging of rapid subcellular processes.. Nature Biotechnology. 41(3):367-77.
Schnermann MJ, Lavis LD.  2023.  Rejuvenating old fluorophores with new chemistry.. Current Opinions in Chemical Biology. 75:102335.
Rajagopalan AE, Darshan R, Hibbard KL, Fitzgerald JE, Turner GC.  2023.  Reward expectations direct learning and drive operant matching in Drosophila. Proceedings of the National Academy of Sciences of the U.S.A.. 120(39):e2221415120.
Vijayan V, Wang F, Wang K, Chakravorty A, Adachi A, Akhlaghpour H, Dickson BJ, Maimon G.  2023.  A rise-to-threshold process for a relative-value decision.. Nature. 619(7970):563-571.
Hulse BK, Stanoev A, Turner-Evans DB, Seelig J, Jayaraman V.  2023.  A rotational velocity estimate constructed through visuomotor competition updates the fly's neural compass. bioRxiv.
Miller AN, Houlihan PR, Matamala E, Cabezas-Bratesco D, Lee GYoung, Cristofori-Armstrong B, Dilan TL, Sanchez-Martinez S, Matthies D, Yan R et al..  2023.  The SARS-CoV-2 accessory protein Orf3a is not an ion channel, but does interact with trafficking proteins. eLife.
Arthur BJ, Kim CM, Chen S, Preibisch S, Darshan R.  2023.  A scalable implementation of the recursive least-squares algorithm for training spiking neural networks. Frontiers in Neuroinformatics.