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Filters: Author is Keller, Philipp J  [Clear All Filters]
2024
Farrants H, Shuai Y, Lemon WC, Hernandez CMonroy, Zhang D, Yang S, Patel R, Qiao G, Frei MS, Plutkis SE et al..  2024.  A modular chemigenetic calcium indicator for multiplexed in vivo functional imaging.. Nat Methods.
2023
Malin-Mayor C, Hirsch P, Guignard L, McDole K, Wan Y, Lemon WC, Kainmueller D, Keller PJ, Preibisch S, Funke J.  2023.  Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.. Nature Biotechnology. 41(1):44-49.
2022
Malin-Mayor C, Hirsch P, Guignard L, McDole K, Wan Y, Lemon WC, Kainmueller D, Keller PJ, Preibisch S, Funke J.  2022.  Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations.. Nature Biotechnology.
2021
Tyser RCV, Ibarra-Soria X, McDole K, Jayaram SA, Godwin J, van den Brand TAH, Miranda AMA, Scialdone A, Keller PJ, Marioni JC et al..  2021.  Characterization of a common progenitor pool of the epicardium and myocardium.. Science.
Keller JP, Marvin JS, Lacin H, Lemon WC, Shea J, Kim S, Lee RT, Koyama M, Keller PJ, Looger LL.  2021.  In vivo glucose imaging in multiple model organisms with an engineered single-wavelength sensor.. Cell Reports. 35(12):109284.
2020
Azizi A, Herrmann A, Wan Y, Buse SJrp, Keller PJ, Goldstein RE, Harris WA.  2020.  Nuclear crowding and nonlinear diffusion during interkinetic nuclear migration in the zebrafish retina.. eLife. 9
Ueda HR, Ertürk A, Chung K, Gradinaru V, Chédotal A, Tomancak P, Keller PJ.  2020.  Tissue clearing and its applications in neuroscience.. Nature Reviews Neuroscience. 21(2):61-79.
Ueda HR, Dodt H-U, Osten P, Economo MN, Chandrashekar J, Keller PJ.  2020.  Whole-brain profiling of cells and circuits in mammals by tissue clearing and light-sheet microscopy.. Neuron. 106(3):369-387.
Ueda HR, Dodt H-U, Osten P, Economo MN, Chandrashekar J, Keller PJ.  2020.  Whole-brain profiling of cells and circuits in mammals by tissue clearing and light-sheet microscopy.. Neuron. 106(3):369-387.
2019
Keller JP, Marvin JS, Lacin H, Lemon WC, Shea J, Kim S, Lee RT, Koyama M, Keller PJ, Looger LL.  2019.  In vivo glucose imaging in multiple model organisms with an engineered single-wavelength sensor.. bioRxiv.
Wan Y, McDole K, Keller PJ.  2019.  Light-sheet microscopy and its potential for understanding developmental processes.. Annual Review of Cell and Developmental Biology. 35:655-81.
Djabrayan NJ-V, Smits CM, Krajnc M, Stern T, Yamada S, Lemon WC, Keller PJ, Rushlow CA, Shvartsman SY.  2019.  Metabolic regulation of developmental cell cycles and zygotic transcription.. Current Biology. 29(7):1193-8.
Wan Y, Wei Z, Looger LL, Koyama M, Druckmann S, Keller PJ.  2019.  Single-cell reconstruction of emerging population activity in an entire developing circuit.. Cell. 179(2)
2018
Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang C-T, Wittenbach J, Freeman J, Preibisch S et al..  2018.  Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.. Nature Methods. 15(12):1117-1125.
McDole K, Guignard L, Amat F, Berger A, Malandain G, Royer LA, Turaga SC, Branson K, Keller PJ.  2018.  In toto imaging and reconstruction of post-implantation mouse development at the single-cell level.. Cell. 175(3):859-876.
Royer LA, Lemon WC, Chhetri RK, Keller PJ.  2018.  A practical guide to adaptive light-sheet microscopy.. Nature Protocols. 13(11):2462–2500.
Khairy K, Lemon WC, Amat F, Keller PJ.  2018.  A preferred curvature-based continuum mechanics framework for modeling embryogenesis.. Biophysical Journal. 114(2):267-77.
2017
Grimm JB, Muthusamy AK, Liang Y, Brown TA, Lemon WC, Patel R, Lu R, Macklin JJ, Keller PJ, Ji N et al..  2017.  A general method to fine-tune fluorophores for live-cell and in vivo imaging.. Nature Methods. 14(10):987-994.
Keller PJ.  2017.  How to make a worm twitch.. Biophysical Journal. 112(9):1737-1738.
Wolff C, Tinevez J-Y, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P et al..  2017.  Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.. eLife. 7:e34410.
2016
Royer LA, Lemon WC, Chhetri RK, Wan Y, Coleman M, Myers EW, Keller PJ.  2016.  Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms.. Nature Biotechnology. 34(12):1267-78.
Liu Z, Keller PJ.  2016.  Emerging imaging and genomic tools for developmental systems biology.. Developmental Cell. 36(6):597-610.
Chhetri RK, Keller PJ.  2016.  Imaging far and wide.. eLife. 5:e21072.
Stegmaier J, Amat F, Lemon WC, McDole K, Wan Y, Teodoro G, Mikut R, Keller PJ.  2016.  Real-time three-dimensional cell segmentation in large-scale microscopy data of developing embryos.. Developmental Cell. 36(2):225-40.
Paksa A, Bandemer J, Höckendorf B, Razin N, Tarbashevich K, Minina S, Meyen D, Gov NS, Keller PJ, Raz E.  2016.  Repulsive cues combined with physical barriers and cell–cell adhesion determine progenitor cell positioning during organogenesis. Nature Communications. 7:11288.