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2012
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.  2012.  TrakEM2 software for neural circuit reconstruction.. PLoS One. 7(6):e38011.
2010
Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V..  2010.  An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy.. PLoS Biology. 8(10)
Preibisch S, Tomancak P, Saalfeld S.  2010.  Into ImgLib—Generic image processing in Java. Proceedings of the ImageJ User and Developer Conference.
Preibisch S, Saalfeld S, Schindelin J, Tomancak P.  2010.  Software for bead-based registration of selective plane illumination microscopy data.. Nature Methods. 7(6):418-9.
2009
Preibisch S, Saalfeld S, Rohlfing T, Tomancak P.  2009.  Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching.. Medical Imaging 2009: Image Processing. 7259:72592S.
Preibisch S, Saalfeld S, Tomancak P.  2009.  Globally optimal stitching of tiled 3D microscopic image acquisitions.. Bioinformatics. 25(11):1463-5.
2008
Preibisch S, Saalfeld S, Tomancak P.  2008.  Fast stitching of large 3d biological datasets.. Proceedings of the ImageJ User and Developer Conference.