Biblio

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2025
Cai C, Traubert O, Tormes-Vaquerano J, M Eybposh H, Turaga SC, Rodriguez-Romaguera J, Naumann EA, Pégard NC.  2025.  Compressive streak microscopy for fast sampling of fluorescent reporters of neural activity.. Neurophotonics. 12(2):025013.
2023
Sheridan A, Nguyen TM, Deb D, Lee W-CAllen, Saalfeld S, Turaga SC, Manor U, Funke J.  2023.  Local shape descriptors for neuron segmentation.. Nature Methods. 20(2):295-303.
2020
Xu S, Yang H, Menon V, Lemire AL, Wang L, Henry FE, Turaga SC, Sternson SM.  2020.  Behavioral state coding by molecularly defined paraventricular hypothalamic cell type ensembles.. Science. 370(6514)
2019
Litwin-Kumar A, Turaga SC.  2019.  Constraining computational models using electron microscopy wiring diagrams.. Current Opinion in Neurobiology. 58:94-100.
Funke J, Tschopp FD, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC.  2019.  Large scale image segmentation with structured loss based deep learning for connectome reconstruction.. IEEE Transactions on Pattern Analysis and Machine Intelligence. 41(7):1669-80.
2018
Tschopp FD, Reiser MB, Turaga SC.  2018.  A connectome based hexagonal lattice convolutional network model of the Drosophila visual system.. arXiv. :1806.04793.
Aitchison L, Adam V, Turaga SC.  2018.  Discrete flow posteriors for variational inference in discrete dynamical systems.. arXiv. :1805.10958.
McDole K, Guignard L, Amat F, Berger A, Malandain G, Royer LA, Turaga SC, Branson K, Keller PJ.  2018.  In toto imaging and reconstruction of post-implantation mouse development at the single-cell level.. Cell. 175(3):859-876.
Buhmann J, Krause R, Lentini RCeballos, Eckstein N, Cook M, Turaga SC, Funke J.  2018.  Synaptic partner prediction from point annotations in insect brains.. MICCAI 2018: Medical Image Computing and Computer Assisted Intervention.
2017
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..  2017.  Community-based benchmarking improves spike inference from two-photon calcium imaging data.. PLoS Computational Biology. 14(5):e1006157.
Nonnenmacher M, Turaga SC, Macke JH.  2017.  Extracting low-dimensional dynamics from multiple large-scale neural population recordings by learning to predict correlations.. 31st Conference on Neural Information Processing Systems (NIPS 2017).
Speiser A, Yan J, Archer E, Buesing L, Turaga SC, Macke JH.  2017.  Fast amortized inference of neural activity from calcium imaging data with variational autoencoders.. Neural Information Processing Systems (NIPS 2017).
Aitchison L, Russell L, Packer AM, Yan J, Castonguaye P, Häusser M, Turaga SC.  2017.  Model-based Bayesian inference of neural activity and connectivity from all-optical interrogation of a neural circuit.. 31st Conference on Neural Information Processing Systems (NIPS 2017).
Aitchison L, Russell L, Packer AM, Yan J, Castonguay P, Häusser M, Turaga SC.  2017.  Model-based Bayesian inference of neural activity and connectivity from all-optical interrogation of a neural circuit. Advances in Neural Information Processing Systems.
2016
Tschopp F, Martel JNP, Turaga SC, Cook M, Funke J.  2016.  Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems.. IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro.
2015
Arganda-Carreras I, Turaga SC, Berger DR, Ciresan D, Giusti A, Gambardella LM, Schmidhuber J, Laptev D, Dwivedi S, Buhmann JM.  2015.  Crowdsourcing the creation of image segmentation algorithms for connectomics.. Frontiers in Neuroanatomy. 9:142.
Kim Y, Venkataraju KUmadevi, Pradhan K, Mende C, Taranda J, Turaga SC, Arganda-Carreras I, Ng L, Hawrylycz MJ, Rockland KS et al..  2015.  Mapping social behavior-induced brain activation at cellular resolution in the mouse.. Cell Reports. 10(2):292-305.
2014
Kim JS, Greene MJ, Zlateski A, Lee K, Richardson M, Turaga SC, Purcaro M, Balkam M, Robinson A, Behabadi BF et al..  2014.  Space-time wiring specificity supports direction selectivity in the retina.. Nature. 509(7500):331-6.
2013
Helmstaedter M, Briggman KL, Turaga SC, Jain V, H Seung S, Denk W.  2013.  Connectomic reconstruction of the inner plexiform layer in the mouse retina.. Nature. 500(7461):168-74.
Turaga SC, Buesing L, Packer AM, Dalgleish H, Pettit N, Häusser M, Macke JH.  2013.  Inferring neural population dynamics from multiple partial recordings of the same neural circuit.. Advances in Neural Information Processing Systems (NIPS) . 26
2010
Turaga SC, Murray JF, Jain V, Roth F, Helmstaedter M, Briggman K, Denk W, Seung HSebastian.  2010.  Convolutional networks can learn to generate affinity graphs for image segmentation.. Neural Computation. 22(2):511-38.
Jain V, Seung HSebastian, Turaga SC.  2010.  Machines that learn to segment images: a crucial technology for connectomics.. Current Opinion in Neurobiology. 20(5):653-66.