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Author Title Type [ Year(Desc)]
2025
Schneider MC, Johnson C, Allier C, Heinrich L, Adjavon D, Husic J, La Riviere P, Saalfeld S, Shroff H.  2025.  DeepPD: Joint Phase and Object Estimation from Phase Diversity with Neural Calibration of a Deformable Mirror. arXiv.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2025.  Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.
Mohar B, Michel G, Wang Y-Z, Hernandez V, Grimm JB, Park J-Y, Patel R, Clarke M, Brown TA, Bergmann C et al..  2025.  DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning.. Nat Neurosci.
Park P, Wong-Campos D, Itkis DG, Lee BHun, Qi Y, Davis H, Antin B, Pasarkar A, Grimm JB, Plutkis SE et al..  2025.  Dendritic excitations govern back-propagation via a spike-rate accelerometer. Nature Communications. 16(1)
Wang X, Arpino G, Mohseni A, Bleck CKE, Wu L-G.  2025.  Dense-core vesicles contain exosomes in secretory cells.. Biophys J.
Aaron J, Chew T-L.  2025.  De-risking transformative microscopy technologies for broad adoption.. J Microsc.
Espinosa-Medina I.  2025.  Design and Generation of TEMPO Reagents for Sequential Labeling and Manipulation of Vertebrate Cell Lineages.. Methods Mol Biol. 2886:327-353.
Tran L, Sharma S, Klein S, Jurgens D, Decarreau J, Liu B, Wang Y, Bera AK, Kang A, Woods J et al..  2025.  Design of Orthogonal Far-Red, Orange and Green Fluorophore-binding Proteins for Multiplex Imaging. bioRxiv.
Ott CM, Lippincott-Schwartz J.  2025.  Design principles of ciliary signaling.. J Cell Sci. 138(20)
Castro P.S, Tomasev N., Anand A., Sharma N., Mohanta R., Perlin K., Jain S., Levin K., Éltető N., Dabney W. et al..  2025.  Discovering Symbolic Cognitive Models from Human and Animal Behavior.. bioRxiv.
Patel A, Gonzalez V, Menon T, Shvartsman SY, Burdine R, Avdeeva M.  2025.  Disrupted developmental signaling induces novel transcriptional states. Proc Natl Acad Sci U S A.
Bates AShakeel, Phelps JS, Kim M, Yang HH, Matsliah A, Ajabi Z, Perlman E, Delgado KM, Osman MAbdal Moni, Salmon CK et al..  2025.  Distributed control circuits across a brain-and-cord connectome. bioRxiv.
Dutta S, Matos MCamila Per, Heintz C, Mutlu ASena, Piper M, Mistry M, Sharma A, Morrow CS, Smith H, Howell P et al..  2025.  The efficacy of longevity interventions in Caenorhabditis elegans is determined by the early life activity of RNA splicing factors.. PLoS Biol. 23(11):e3003504.
Guo Y, Hermundstad AM.  2025.  Efficient planning and implementation of optimal foraging strategies under energetic constraints. bioRxiv.
Hernandez-Nunez L, Avrami J, Shi S, Markarian A, Boulanger-Weill J, Zarghani-Shiraz A, Ahrens M, Engert F, Fishman MC.  2025.  Emergence of Functional Heart-Brain Circuits in a Vertebrate.. bioRxiv.
Flierman NA, Koay SAnn, van Hoogstraten WS, Ruigrok TJH, Roelfsema P, Badura A, De Zeeuw CI.  2025.  Encoding of cerebellar dentate neuron activity during visual attention in rhesus macaques.. Elife. 13
Guo Y, Hermundstad AM.  2025.  Environmental dynamics impact whether matching is optimal. bioRxiv.
Kim D, Park P, Li X, J Wong-Campos D, Tian H, Moult EM, Grimm JB, Lavis LD, Cohen AE.  2025.  EPSILON: a method for pulse-chase labeling to probe synaptic AMPAR exocytosis during memory formation.. Nat Neurosci.
Joo JHyuck, Kasberg W, Douglas S, Udoh U, Carisey A, Messing J, Wang Y-D, Narina S, Pruett-Miller SM, Labelle M et al..  2025.  ER-to-Golgi Trafficking is a Nutrient-Sensitive Checkpoint Linking Glucose Starvation to Cell Surface Remodeling. bioRxiv.
Tadres D, Shiozaki HM, Tastekin I, Stern DL, Louis M.  2025.  An essential experimental control for functional connectivity mapping with optogenetics.. Genetics. 231(3)
Yoo J, Xie F, Butrus S, Xu R, Tan Z, Gorzek R, Mirshahidi P, Tring E, Suresh S, Kim J et al..  2025.  Establishing a continuum of cell types in the visual cortex. bioRxiv.
Moret A, Farrants H, Fan R, Zingg KG, Silva B, Roselli C, Oertner TG, Gee CE, Hadjieconomou D, Rangaraju V et al..  2025.  An expanded palette of bright and photostable organellar Ca2+ sensors. eLife.
Dalangin R, Jia BZ, Qi Y, Aggarwal A, Sakoi K, Drobizhev M, Molina RS, Patel R, Abdelfattah AS, Zheng J et al..  2025.  Far-red fluorescent genetically encoded calcium ion indicators.. Nat Commun. 16(1):3318.
Mi X, Chen ABo-Yuan, Duarte D, Carey E, Taylor CR, Braaker PN, Bright M, Almeida RG, Lim J-X, Ruetten VMS et al..  2025.  Fast, accurate, and versatile data analysis platform for the quantification of molecular spatiotemporal signals.. Cell.
Moore AS, Krug T, Hansen SB, Ludlow AV, Grimm JB, Ayala AX, Plutkis SE, Wang N, Goldman RD, Medalia O et al..  2025.  FilaBuster: A Strategy for Rapid, Specific, and Spatiotemporally Controlled Intermediate Filament Disassembly. bioRxiv.