Biblio

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2024
Chen C, Niehaus JK, Dinc F, Huang KL, Barnette AL, Tassou A, S Shuster A, Wang L, Lemire A, Menon V et al..  2024.  Neural circuit basis of placebo pain relief.. Nature.
2020
Xu S, Yang H, Menon V, Lemire AL, Wang L, Henry FE, Turaga SC, Sternson SM.  2020.  Behavioral state coding by molecularly defined paraventricular hypothalamic cell type ensembles.. Science. 370(6514)
2019
Shekhar K, Menon V.  2019.  Identification of cell types from single-cell transcriptomic data.. Methods in Molecular Biology. 1935:45-77.
Baek M, Menon V, Jessell TM, Hantman AW, Dasen J.  2019.  Molecular logic of spinocerebellar tract neuron diversity and connectivity.. Cell Reports. 27(9):2620-35.
2018
Cembrowski MS, Menon V.  2018.  Continuous variation within cell types of the nervous system.. Trends in Neurosciences. 41(6):337-48.
Economo MN, Viswanathan S, Tasic B, Bas E, Winnubst J, Menon V, Graybuck LT, Nguyen TNghi, Smith KA, Yao Z et al..  2018.  Distinct descending motor cortex pathways and their roles in movement.. Nature. 563(7729):79-84.
Tasic B, Yao Z, Graybuck LT, Smith KA, Nguyen TNghi, Bertagnolli D, Goldy J, Garren E, Economo MN, Viswanathan S et al..  2018.  Shared and distinct transcriptomic cell types across neocortical areas.. Nature. 563(7729):72-78.
2017
Menon V.  2017.  Clustering single cells: a review of approaches on high-and low-depth single-cell RNA-seq data.. Briefings in Functional Genomics. 17(4):240-45.
2016
Tasic B, Menon V, Nguyen TNghi, Kim TKyung, Jarsky T, Yao Z, Levi B, Gray LT, Sorensen SA, Dolbeare T et al..  2016.  Adult mouse cortical cell taxonomy revealed by single cell transcriptomics.. Nature neuroscience. 19(2):335-46.
2015
Hawrylycz M, Miller JA, Menon V, Feng D, Dolbeare T, Guillozet-Bongaarts AL, Jegga AG, Aronow BJ, Lee C-K, Bernard A et al..  2015.  Canonical genetic signatures of the adult human brain.. Nature neuroscience. 18(12):1832-44.
Sorensen SA, Bernard A, Menon V, Royall JJ, Glattfelder KJ, Desta T, Hirokawa K, Mortrud M, Miller JA, Zeng H et al..  2015.  Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity.. Cerebral Cortex (New York, N.Y. : 1991). 25(2):433-49.
Martinez RA, Stein JL, Krostag A-RF, Nelson AM, Marken JS, Menon V, May RC, Yao Z, Kaykas A, Geschwind DH et al..  2015.  Genome engineering of isogenic human ES cells to model autism disorders.. Nucleic acids research. 43(10):e65.
2014
Thompson CL, Ng L, Menon V, Martinez S, Lee C-K, Glattfelder K, Sunkin SM, Henry A, Lau C, Dang C et al..  2014.  A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain.. Neuron. 83(2):309-23.
Miller JA, Menon V, Goldy J, Kaykas A, Lee C-K, Smith KA, Shen EH, Phillips JW, Lein ES, Hawrylycz MJ.  2014.  Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq.. BMC genomics. 15:154.
2013
Menon V, Musial TF, Liu A, Katz Y, Kath WL, Spruston N, Nicholson DA.  2013.  Balanced synaptic impact via distance-dependent synapse distribution and complementary expression of AMPARs and NMDARs in hippocampal dendrites.. Neuron. 80:1451-63.
Fowler A, Menon V, Heard NA.  2013.  Dynamic Bayesian clustering.. Journal of bioinformatics and computational biology. 11(5):1342001.
Iyer R, Menon V, Buice M, Koch C, Mihalas S.  2013.  The influence of synaptic weight distribution on neuronal population dynamics.. PLoS computational biology. 9(10):e1003248.
Menon V, Vallat BK, Dybas JM, Fiser A.  2013.  Modeling proteins using a super-secondary structure library and NMR chemical shift information.. Structure (London, England : 1993). 21(6):891-9.
2011
Lim J, Menon V, Bitzer M, Miller LM, Madrid-Aliste C, Weiss LM, Fiser A, Angeletti RH.  2011.  Frozen tissue can provide reproducible proteomic results of subcellular fractionation.. Analytical biochemistry. 418(1):78-84.
Khrapunovich-Baine M, Menon V, Yang C-PHuang, Northcote PT, Miller JH, Angeletti RHogue, Fiser A, Horwitz SBand, Xiao H.  2011.  Hallmarks of molecular action of microtubule stabilizing agents: effects of epothilone B, ixabepilone, peloruside A, and laulimalide on microtubule conformation.. The Journal of biological chemistry. 286(13):11765-78.
Hawrylycz M, Ng L, Page D, Morris J, Lau C, Faber S, Faber V, Sunkin S, Menon V, Lein E et al..  2011.  Multi-scale correlation structure of gene expression in the brain.. Neural networks : the official journal of the International Neural Network Society. 24(9):933-42.
2009
Khrapunovich-Baine M, Menon V, Verdier-Pinard P, Smith AB, Angeletti RHogue, Fiser A, Horwitz SBand, Xiao H.  2009.  Distinct pose of discodermolide in taxol binding pocket drives a complementary mode of microtubule stabilization.. Biochemistry. 48(49):11664-77.
Menon V, Spruston N, Kath WL.  2009.  A state-mutating genetic algorithm to design ion-channel models.. Proceedings of the National Academy of Sciences of the United States of America. 106(39):16829-34.
Katz Y, Menon V, Nicholson DA, Geinisman Y, Kath WL, Spruston N.  2009.  Synapse distribution suggests a two-stage model of dendritic integration in CA1 pyramidal neurons.. Neuron. 63(2):171-7.