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Author Title Type [ Year(Asc)]
Filters: Author is Stringer, Carsen  [Clear All Filters]
2025
Stringer C, Pachitariu M.  2025.  Cellpose3: one-click image restoration for improved cellular segmentation.. Nat Methods.
Pachitariu M, Zhong L, Gracias A, Minisi A, Lopez C, Stringer C.  2025.  A critical initialization for biological neural networks. bioRxiv.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2025.  Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.
Sun W, Winnubst J, Natrajan M, Lai C, Kajikawa K, Michaelos M, Gattoni R, Stringer C, Flickinger D, Fitzgerald JE et al..  2025.  Learning produces an orthogonalized state machine in the hippocampus.. Nature.
2024
Stringer C, Pachitariu M.  2024.  Analysis methods for large-scale neuronal recordings.. Science. 386(6722):eadp7429.
Farrants H, Shuai Y, Lemon WC, Hernandez CMonroy, Zhang D, Yang S, Patel R, Qiao G, Frei MS, Plutkis SE et al..  2024.  A modular chemigenetic calcium indicator for multiplexed in vivo functional imaging.. Nat Methods.
Qian X, Coleman K, Jiang S, Kriz AJ, Marciano JH, Luo C, Cai C, Manam MDevi, Caglayan E, Otani A et al..  2024.  Spatial Single-cell Analysis Decodes Cortical Layer and Area Specification. bioRxiv.
Pachitariu M, Sridhar S, Pennington J, Stringer C.  2024.  Spike sorting with Kilosort4. Nat Methods.
Du F, Núñez-Ochoa MAngel, Pachitariu M, Stringer C.  2024.  Towards a simplified model of primary visual cortex. bioRxiv.
2023
Lovelace JW, Ma J, Yadav S, Chhabria K, Shen H, Pang Z, Qi T, Sehgal R, Zhang Y, Bali T et al..  2023.  Vagal sensory neurons mediate the Bezold-Jarisch reflex and induce syncope.. Nature. 623(7986):387-396.
2022
Pachitariu M, Stringer C.  2022.  Cellpose 2.0: how to train your own model.. Nature Methods. 19(12):1634-41.
Avitan L, Stringer C.  2022.  Not so spontaneous: Multi-dimensional representations of behaviors and context in sensory areas.. Neuron. 110(19):3064.
Cutler KJ, Stringer C, Lo TW, Rappez L, Stroustrup N, S Peterson B, Wiggins PA, Mougous JD.  2022.  Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation.. Nature Methods.
2021
Stringer C, Wang T, Michaelos M, Pachitariu M.  2021.  Cellpose: a generalist algorithm for cellular segmentation.. Nature Methods. 18(1):100-106.
Stringer C, Michaelos M, Tsyboulski D, Lindo SE, Pachitariu M.  2021.  High-precision coding in visual cortex.. Cell. 184(10):2767-78.
2020
Stringer C, Michaelos M, Pachitariu M.  2020.  Cellpose: a generalist algorithm for cellular segmentation. bioRxiv.
2019
Stringer C, Michaelos M, Pachitariu M.  2019.  High precision coding in visual cortex. BioRxiv. :679324.
Stringer C, Pachitariu M, Steinmetz NA, Carandini M, Harris KD.  2019.  High-dimensional geometry of population responses in visual cortex.. Nature. 571(7765):361-65.
Stringer C, Pachitariu M, Steinmetz NA, Reddy CBai, Carandini M, Harris KD.  2019.  Spontaneous behaviors drive multidimensional, brain-wide population activity.. Science. 364(6437):255.
2018
Stringer C, Pachitariu M.  2018.  Computational processing of neural recordings from calcium imaging data.. Current Opinion in Neurobiology. 55:22-31.
Pachitariu M, Stringer C, Harris KD.  2018.  Robustness of spike deconvolution for neuronal calcium imaging.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 38(37):7976-85.
2017
Pachitariu M, Stringer C, Harris KD.  2017.  Robustness of spike deconvolution for calcium imaging of neural spiking.. bioRxiv. :156786.
Pachitariu M, Stringer C, Dipoppa M, Schröder S, L Rossi F, Dalgleish H, Carandini M, Harris KD.  2017.  Suite2p: beyond 10,000 neurons with standard two-photon microscopy.. bioRxiv. :061507.
2016
Stringer C, Pachitariu M, Steinmetz NA, Okun M, Bartho P, Harris KD, Sahani M, Lesica NA.  2016.  Inhibitory control of correlated intrinsic variability in cortical networks.. eLife. 5
Stringer C, Pachitariu M, Steinmetz NA, Okun M, Bartho P, Harris KD, Sahani M, Lesica NA.  2016.  Inhibitory control of correlated intrinsic variability in cortical networks. Elife. 5:e19695.