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2025
Keller JA, Kwak IS, Stark AK, Pachitariu M, Branson K, Dudman JT.  2025.  Cortical control of innate behavior from subcortical demonstration. bioRxiv.
2024
Robie AA, Taylor AL, Schretter CE, Kabra M, Branson K.  2024.  The Fly Disco: Hardware and software for optogenetics and fine-grained fly behavior analysis. bioRxiv.
Gorko B, Siwanowicz I, Close K, Christoforou C, Hibbard KL, Kabra M, Lee A, Park J-Y, Li SYing, Chen AB et al..  2024.  Motor neurons generate pose-targeted movements via proprioceptive sculpting.. Nature.
2020
Sauerbrei BA, Guo J-Z, Cohen JD, Mischiati M, Guo W, Kabra M, Verma N, Mensh B, Branson K, Hantman AW.  2020.  Cortical pattern generation during dexterous movement is input-driven.. Nature. 577(7790):386-91.
Kwak IS, Guo J-Z, Hantman A, Branson K, Kriegman D.  2020.  Detecting the Starting Frame of Actions in Video. 2020 IEEE Winter Conference on Applications of Computer Vision (WACV).
2019
Ravbar P, Branson K, Simpson JH.  2019.  An automatic behavior recognition system classifies animal behaviors using movements and their temporal context.. Journal of Neuroscience Methods. 326:108352.
Datta SRobert, Anderson DJ, Branson K, Perona P, Leifer A.  2019.  Computational neuroethology: A call to action.. Neuron. 104(1):11-24.
Ache JM, Namiki S, Lee A, Branson K, Card GM.  2019.  State-dependent decoupling of sensory and motor circuits underlies behavioral flexibility in Drosophila.. Nature Neuroscience. 22(7):1132-1139.
2018
Branson K.  2018.  A deep (learning) dive into a cell.. Nature Methods. 15(4):253-4.
McDole K, Guignard L, Amat F, Berger A, Malandain G, Royer LA, Turaga SC, Branson K, Keller PJ.  2018.  In toto imaging and reconstruction of post-implantation mouse development at the single-cell level.. Cell. 175(3):859-876.
Rodriguez IF, Megret R, Egnor R, Branson K, Agosto JL, Giray T, Acuna E.  2018.  Multiple animals tracking in video using part affinity fields. Visual observation and analysis of Vertebrate And Insect Behavior 2018.
2017
Robie AA, Seagraves KM, Egnor SERoian, Branson K.  2017.  Machine vision methods for analyzing social interactions.. The Journal of Experimental Biology. 220(Pt 1):25-34.
Sen R, Wu M, Branson K, Robie A, Rubin GM, Dickson BJ.  2017.  Moonwalker descending neurons mediate visually evoked retreat in Drosophila.. Current Biology : CB. 27(5):766-71.
2016
Egnor SERoian, Branson K.  2016.  Computational Analysis of Behavior.. Annual Review of Neuroscience. 39:217-36.
Im DJiwoong, Tao M, Branson K.  2016.  An empirical analysis of deep network loss surfaces.. arXiv. :arXiv:1612.04010.
Eyjolfsdottir E, Branson K, Yue Y, Perona P.  2016.  Learning recurrent representations for hierarchical behavior modeling.. arXiv. arXiv:1611.00094(arXiv:1611.00094)
2015
Guo J-Z, Graves AR, Guo WW, Zheng J, Lee A, Rodríguez-González J, Li N, Macklin JJ, Phillips JW, Mensh BD et al..  2015.  Cortex commands the performance of skilled movement.. eLife. 4
Branson K, Freeman J.  2015.  Imaging the neural basis of locomotion.. Cell. 163(3):541-2.
2014
Dell AI, Bender JA, Branson K, Couzin ID, de Polavieja GG, Noldus LPJJ, Pérez-Escudero A, Perona P, Straw AD, Wikelski M et al..  2014.  Automated image-based tracking and its application in ecology.. Trends in Ecology and Evolution. 29(7):417-428.
Tervo DGR, Proskurin M, Manakov M, Kabra M, Vollmer A, Branson K, Karpova AY.  2014.  Behavioral variability through stochastic choice and its gating by anterior cingulate cortex.. Cell. 159(1):21-32.
Branson K.  2014.  Distinguishing seemingly indistinguishable animals with computer vision.. Nature Methods. 11(7):721-2.
Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ.  2014.  Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data.. Nature Methods. 11(9):951-8.
2013
Kabra M, Robie AA, Rivera-Alba M, Branson S, Branson K.  2013.  JAABA: interactive machine learning for automatic annotation of animal behavior.. Nature Methods. 10:64-7.
2012
Eyjolfsdottir E, Burgos-Artizzu XP, Branson S, Branson K, Anderson D, Perona P.  2012.  Learning animal social behavior from trajectory features.. Workshop on Visual Observation and Analysis of Animal and Insect Behavior.
Zabala F, Polidoro P, Robie AA, Branson K, Perona P, Dickinson MH.  2012.  A simple strategy for detecting moving objects during locomotion revealed by animal-robot interactions.. Current Biology. 22(14):1344-50.