Biblio

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Author Title Type [ Year(Desc)]
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2018
Dana H, Sun Y, Mohar B, Hulse B, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R, Macklin JJ et al..  2018.  High-performance GFP-based calcium indicators for imaging activity in neuronal populations and microcompartments.. bioRxiv.
Inagaki HK, Inagaki M, Romani S, Svoboda K.  2018.  Low-dimensional and monotonic preparatory activity in mouse anterior lateral motor cortex.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 38(17):4163-85.
Tasic B, Yao Z, Graybuck LT, Smith KA, Nguyen TNghi, Bertagnolli D, Goldy J, Garren E, Economo MN, Viswanathan S et al..  2018.  Shared and distinct transcriptomic cell types across neocortical areas.. Nature. 563(7729):72-78.
Dana H, Novak O, Guardado-Montesino M, Fransen JW, Hu A, Borghuis BG, Guo C, Kim DS, Svoboda K.  2018.  Thy1 transgenic mice expressing the red fluorescent calcium indicator jRGECO1a for neuronal population imaging in vivo.. PloS One. 13(10):e0205444.
2019
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..  2019.  Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
Inagaki HK, Fontolan L, Romani S, Svoboda K.  2019.  Discrete attractor dynamics underlies persistent activity in the frontal cortex.. Nature. 566(7743):212-7.
Kerlin A, Boaz M, Flickinger D, MacLennan BJ, Dean MB, Davis C, Spruston N, Svoboda K.  2019.  Functional clustering of dendritic activity during decision-making.. Elife. 8
Dana H, Sun Y, Mohar B, Hulse BK, Kerlin AM, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R et al..  2019.  High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.. Nature Methods. 16(7):649-57.
Rubel O, Tritt A, Dichter B, Braun T, Cain N, Clack NG, Davidson TJ, Dougherty M, Fillion-Rubin J-C, Graddis N et al..  2019.  NWB:N 2.0: An accessible data standard for neurophysiology.. bioRxiv.
Wei Z, Inagaki H, Li N, Svoboda K, Druckmann S.  2019.  An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability.. Nature Communications. 10(1):216.
Campagner D, Evans MH, Chlebikova K, Colins-Rodriguez A, Loft MSE, Fox S, Pettifer D, Humphries MD, Svoboda K, Petersen RS.  2019.  Prediction of choice from competing mechanosensory and choice-memory cues during active tactile decision making.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 39(20):3921-33.
Yu J, Hu H, Agmon A, Svoboda K.  2019.  Principles governing the dynamics of GABAergic interneurons in the barrel cortex.. bioRxiv.
Winnubst J, Bas E, Ferreira TA, Wu Z, Economo MN, Edson P, Arthur BJ, Bruns C, Rokicki K, Schauder D et al..  2019.  Reconstruction of 1,000 projection neurons reveals new cell types and organization of long-range connectivity in the mouse brain.. Cell. 179(1):268-81.
Yu J, Hu H, Agmon A, Svoboda K.  2019.  Recruitment of GABAergic interneurons in the barrel cortex during active tactile behavior.. Neuron. 104(2):412-27.
Gao Z, Thomas AM, Economo MN, Abrego AM, Svoboda K, De Zeeuw CI, Li N.  2019.  Response to "Fallacies of mice experiments".. Neuroinformatics.
Li N, Chen S, Guo ZV, Chen H, Huo Y, Inagaki HK, Chen G, Davis C, Hansel D, Guo C et al..  2019.  Spatiotemporal constraints on optogenetic inactivation in cortical circuits.. eLife. 8
2020
Wei Z, Lin B-J, Chen T-W, Daie K, Svoboda K, Druckmann S.  2020.  A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology.. PLoS Computational Biology. 16(9):e1008198.
Molina RS, King J, Franklin J, Clack N, McRaven C, Goncharov V, Flickinger D, Svoboda K, Drobizhev M, Hughes TE.  2020.  High throughput instrument to screen fluorescent proteins under two-photon excitation.. Biomedical Optics Express. 11(12):7192-7203.
Abbott LF, Bock DD, Callaway EM, Denk W, Dulac C, Fairhall AL, Fiete I, Harris KM, Helmstaedter M, Jain V et al..  2020.  The mind of a mouse.. Cell. 182(6):1372-1376.
Lu R, Liang Y, Meng G, Zhou P, Svoboda K, Paninski L, Ji N.  2020.  Rapid mesoscale volumetric imaging of neural activity with synaptic resolution.. Nature Methods. 17(3):291-4.
Peron S, Pancholi R, Voelcker B, Wittenbach JD, H Ólafsdóttir F, Freeman J, Svoboda K.  2020.  Recurrent interactions in local cortical circuits.. Nature. 579(7798):256-59.
2021
Liu LD, Chen S, Economo MN, Li N, Svoboda K.  2021.  Accurate localization of linear probe electrodes across multiple brains.. eNeuro. 8(6):ENEURO.0241-21.2021.
Finkelstein A, Fontolan L, Economo MN, Li N, Romani S, Svoboda K.  2021.  Attractor dynamics gate cortical information flow during decision-making.. Nature Neuroscience. 24(6):843-50.
Wang Y, Eddison M, Fleishman G, Weigert M, Xu S, Wang T, Rokicki K, Goina C, Henry FE, Lemire AL et al..  2021.  EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization.. Cell. 184(26):6361.
Xie ME, Adam Y, Fan LZ, Böhm UL, Kinsella I, Zhou D, Rozsa M, Singh A, Svoboda K, Paninski L et al..  2021.  High-fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo.. Cell Reports. 35(1):108954.