Biblio

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2013
Newhart A, Rafalska-Metcalf IU, Yang T, Joo LM, Powers SLawrence, Kossenkov AV, Lopez-Jones M, Singer RH, Showe LC, Skordalakes E et al..  2013.  Single cell analysis of RNA-mediated histone H3.3 recruitment to a cytomegalovirus promoter-regulated transcription site.. The Journal of Biological Chemistry. 288(27):19882-99.
Hocine S, Raymond P, Zenklusen D, Chao JA, Singer RH.  2013.  Single-molecule analysis of gene expression using two-color RNA labeling in live yeast.. Nature Methods. 10(2):119-21.
Trcek T, Sato H, Singer RH, Maquat LE.  2013.  Temporal and spatial characterization of nonsense-mediated mRNA decay.. Genes & Development. 27(5):541-51.
Wu B, Singer RH, Mueller JD.  2013.  Time-integrated fluorescence cumulant analysis and its application in living cells.. Methods in Enzymology. 518:99-119.
2012
Wu B, Chao JA, Singer RH.  2012.  Fluorescence fluctuation spectroscopy enables quantitative imaging of single mRNAs in living cells.. Biophysical Journal. 102(12):2936-44.
Stöhr N, Köhn M, Lederer M, Glass M, Reinke C, Singer RH, Hüttelmaier S.  2012.  IGF2BP1 promotes cell migration by regulating MK5 and PTEN signaling.. Genes & Development. 26(2):176-89.
Chao JA, Yoon YJ, Singer RH.  2012.  Imaging translation in single cells using fluorescent microscopy.. Cold Spring Harbor Perspectives in Biology. 4(11)
Grunwald D, Singer RH.  2012.  Multiscale dynamics in nucleocytoplasmic transport.. Current Opinion in Cell Biology. 24(1):100-6.
Singer S, Zhao R, Barsotti AM, Ouwehand A, Fazollahi M, Coutavas E, Breuhahn K, Neumann O, Longerich T, Pusterla T et al..  2012.  Nuclear pore component Nup98 is a potential tumor suppressor and regulates posttranscriptional expression of select p53 target genes.. Molecular Cell. 48(5):799-810.
Gu W, Katz Z, Wu B, Park HYoon, Li D, Lin S, Wells AL, Singer RH.  2012.  Regulation of local expression of cell adhesion and motility-related mRNAs in breast cancer cells by IMP1/ZBP1.. The Journal of Cell Science. 125(Pt 1):81-91.
Trcek T, Chao JA, Larson DR, Park HYoon, Zenklusen D, Shenoy SM, Singer RH.  2012.  Single-mRNA counting using fluorescent in situ hybridization in budding yeast.. Nature Protocols. 7(2):408-19.
Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH et al..  2012.  Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control.. Genes & Development. 26(1):43-53.
Lionnet T, Singer RH.  2012.  Transcription goes digital.. EMBO Reports. 13(4):313-21.
Lapidus KAB, Nwokafor C, Scott D, Baroni TE, Tenenbaum SA, Hiroi N, Singer RH, Czaplinski K.  2012.  Transgenic expression of ZBP1 in neurons suppresses cocaine-associated conditioning.. Learning & Memory. 19(2):35-42.
Park HYoon, Trcek T, Wells AL, Chao JA, Singer RH.  2012.  An unbiased analysis method to quantify mRNA localization reveals its correlation with cell motility.. Cell Reports. 1(2):179-84.
Katz ZB, Wells AL, Park HYoon, Wu B, Shenoy SM, Singer RH.  2012.  β-Actin mRNA compartmentalization enhances focal adhesion stability and directs cell migration.. Genes & Development. 26(17):1885-90.
2011
de Turris V, Nicholson P, Orozco RZamudio, Singer RH, Mühlemann O.  2011.  Cotranscriptional effect of a premature termination codon revealed by live-cell imaging.. RNA. 17(12):2094-107.
Powrie EA, Zenklusen D, Singer RH.  2011.  A nucleoporin, Nup60p, affects the nuclear and cytoplasmic localization of ASH1 mRNA in S. cerevisiae.. RNA. 17(1):134-44.
Larson DR, Zenklusen D, Wu B, Chao JA, Singer RH.  2011.  Real-time observation of transcription initiation and elongation on an endogenous yeast gene.. Science. 332(6028):475-8.
Trcek T, Larson DR, Moldón A, Query CC, Singer RH.  2011.  Single-molecule mRNA decay measurements reveal promoter- regulated mRNA stability in yeast.. Cell. 147(7):1484-97.
Fallini C, Zhang H, Su Y, Silani V, Singer RH, Rossoll W, Bassell GJ.  2011.  The survival of motor neuron (SMN) protein interacts with the mRNA-binding protein HuD and regulates localization of poly(A) mRNA in primary motor neuron axons.. The Journal of Neuroscience. 31(10):3914-25.
Gandhi SJ, Zenklusen D, Lionnet T, Singer RH.  2011.  Transcription of functionally related constitutive genes is not coordinated.. Nature Structural & Molecular Biology. 18(1):27-34.
Lionnet T, Czaplinski K, Darzacq X, Shav-Tal Y, Wells AL, Chao JA, Park HYoon, de Turris V, Lopez-Jones M, Singer RH.  2011.  A transgenic mouse for in vivo detection of endogenous labeled mRNA.. Nature Methods. 8(2):165-70.
Noordermeer D, de Wit E, Klous P, van de Werken H, Simonis M, Lopez-Jones M, Eussen B, de Klein A, Singer RH, de Laat W.  2011.  Variegated gene expression caused by cell-specific long-range DNA interactions.. Nature Cell Biology. 13(8):944-51.
2009
Darzacq X, Yao J, Larson DR, Causse SZ, Bosanac L, de Turris V, Ruda VM, Lionnet T, Zenklusen D, Guglielmi B et al..  2009.  Imaging transcription in living cells.. Annual Review of Biophysics. 38:173-96.