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janelia7_blocks-janelia7_biblio_header | block
Bioinformatics. 2009 May 15;25(10):1236-43. doi: 10.1093/bioinformatics/btp154
Local RNA structure alignment with incomplete sequence. Eddy/Rivas Lab
Kolbe DL, Eddy SR
janelia7_blocks-janelia7_biblio_abstract | block
Abstract
Accuracy of automated structural RNA alignment is improved by using models that consider not only primary sequence but also secondary structure information. However, current RNA structural alignment approaches tend to perform poorly on incomplete sequence fragments, such as single reads from metagenomic environmental surveys, because nucleotides that are expected to be base paired are missing.
PMID: 19304875 [PubMed - indexed for MEDLINE]
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janelia7_blocks-janelia7_biblio_authors | block
Janelia Authors
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