Biblio

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Author Title Type [ Year(Asc)]
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2025
Dalangin R, Jia BZ, Qi Y, Aggarwal A, Sakoi K, Drobizhev M, Molina RS, Patel R, Abdelfattah AS, Zheng J et al..  2025.  Far-red fluorescent genetically encoded calcium ion indicators.. Nat Commun. 16(1):3318.
Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie ME, MacLennan BJ, Hagihara KM et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. Nat Methods.
Podgorski K, Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie M, Maclennan B et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. Research Square.
Aggarwal A, Baker HA, Dürst CD, Chen I-W, de Chambrier P, Gonzales JMarie, Marvin JS, Vandal M, Lundberg T, Sakoi K et al..  2025.  A sensitive orange fluorescent calcium ion indicator for imaging neural activity. bioRxiv.
2024
Villette V, Yang S, Valenti R, Macklin JJ, Bradley J, Mathieu B, Lombardini A, Podgorski K, Dieudonné S, Schreiter ER et al..  2024.  A novel rhodopsin-based voltage indicator for simultaneous two-photon optical recording with GCaMP in vivo. bioRxiv.
Aggarwal A, Chan J, Waring AK, Negrean A, Marvin JS, Podgorski K, Looger LL.  2024.  Visualization of Glutamatergic Neurotransmission in Diverse Model Organisms with Genetically Encoded Indicators. New Technologies for Glutamate Interaction: Neurons and Glia. 2780:3–34.
2023
Aggarwal A, Liu R, Chen Y, Ralowicz AJ, Bergerson SJ, Tomaska F, Mohar B, Hanson TL, Hasseman JP, Reep D et al..  2023.  Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission.. Nature Methods. 20(6)
Nasu Y, Aggarwal A, Le GNT, Vo CTrang, Kambe Y, Wang X, Beinlich FRM, Lee ABomin, Ram TR, Wang F et al..  2023.  Lactate biosensors for spectrally and spatially multiplexed fluorescence imaging.. Nature Communications. 14(1):6598.
2022
Wu S-Y, Wen Y, Serre NBC, Laursen CCharlotte, Dietz AGrostøl, Taylor BR, Drobizhev M, Molina RS, Aggarwal A, Rancic V et al..  2022.  A sensitive and specific genetically encoded potassium ion biosensor for in vivo applications across the tree of life.. PLoS Biology. 20(9):e3001772.
2021
Nasu Y, Murphy-Royal C, Wen Y, Haidey JN, Molina RS, Aggarwal A, Zhang S, Kamijo Y, Paquet M-E, Podgorski K et al..  2021.  A genetically encoded fluorescent biosensor for extracellular L-lactate.. Nature Communications. 12(1):7058.
Deb D, Jiao Z, Chen AB, Broxton M, Ahrens MB, Podgorski K, Turaga SC.  2021.  Programmable 3D snapshot microscopy with Fourier convolutional networks.
Cai C, Friedrich J, Singh A, M Eybposh H, Pnevmatikakis EA, Podgorski K, Giovannucci A.  2021.  VolPy: Automated and scalable analysis pipelines for voltage imaging datasets.. PLoS Computational Biology. 17(4):e1008806.
2020
Zarowny L, Aggarwal A, Rutten VMS, Kolb I, Patel R, Huang H-Y, Chang Y-F, Phan T, Kanyo R, Ahrens MB et al..  2020.  Bright and high-performance genetically encoded Ca indicator based on mNeonGreen fluorescent protein.. ACS Sensors.
Sakaki KDR, Podgorski K, Toth TADellaziz, Coleman P, Haas K.  2020.  Comprehensive imaging of sensory-evoked activity of entire neurons within the awake developing brain using ultrafast AOD-based random-access two-photon microscopy.. Frontiers in Neural Circuits. 14:33.
Borden P, Zhang P, Shivange AV, Marvin JS, Cichon J, Dan C, Podgorski K, Figueiredo A, Novak O, Tanimoto M et al..  2020.  A fast genetically encoded fluorescent sensor for faithful in vivo acetylcholine detection in mice, fish, worms and flies.. bioRxiv.
Abdelfattah AS, Valenti R, Zheng J, Wong A, Podgorski K, Koyama M, Kim DS, Schreiter ER, GENIE PTeam.  2020.  A general approach to engineer positive-going eFRET voltage indicators. Nature Communications. 11(1)
Mohr MAlexander, Bushey D, Aggarwal A, Marvin JS, Kim JJun, Marquez EJimenez, Liang Y, Patel R, Macklin JJ, Lee C-Y et al..  2020.  jYCaMP: an optimized calcium indicator for two-photon imaging at fiber laser wavelengths.. Nature Methods. 17(1):694-97.
2019
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..  2019.  Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
Marvin JS, Shimoda Y, Magloire V, Leite M, Kawashima T, Jensen TP, Kolb I, Knott EL, Novak O, Podgorski K et al..  2019.  A genetically encoded fluorescent sensor for in vivo imaging of GABA.. Nature Methods. 16(8):763-770.
Modi MN, Daie K, Turner GC, Podgorski K.  2019.  Two-photon imaging with silicon photomultipliers.. Optics Express. 27(24):35830-35841.
2018
Kazemipour A, Babadi B, wu min, Podgorski K, Druckmann S.  2018.  Multiplicative updates for optimization problems with dynamics.. IEEE Xplore.
Marvin JS, Scholl B, Wilson DE, Podgorski K, Kazemipour A, Mueller JAlexander, Schoch-McGovern S, Wang SS-H, Quiroz FJose Urra, Rebola N et al..  2018.  Stability, affinity and chromatic variants of the glutamate sensor iGluSnFR.. Nature Methods. 15(11):9386-9.
2016
Podgorski K, Ranganathan GNattar.  2016.  Brain heating induced by near infrared lasers during multi-photon microscopy.. Journal of Neurophysiology. 116(3):1012-23.