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2024
Hermundstad AM, Młynarski WF.  2024.  A theory of rapid behavioral inferences under the pressure of time. bioRxiv.
Chandler T, Guo M, Su Y, Chen J, Wu Y, Liu J, Agashe A, Fischer RS, Mehta SB, Kumar A et al..  2024.  Three-dimensional spatio-angular fluorescence microscopy with a polarized dual-view inverted selective-plane illumination microscope (pol-diSPIM). bioRxiv.
Zhang L-Q, Mao J, Aguirre GKarl, Stocker AA.  2024.  The tilt illusion arises from an efficient reallocation of neural coding resources at the contextual boundary. bioRxiv.
Du F, Núñez-Ochoa MAngel, Pachitariu M, Stringer C.  2024.  Towards a simplified model of primary visual cortex. bioRxiv.
Stringer C, Pachitariu M.  2024.  Transformers do not outperform Cellpose. bioRxiv.
Kumar P, Gutu A, Waring A, Brown TA, Lavis LD, Tebo AG.  2024.  Transforming chemigenetic bimolecular fluorescence complementation systems into chemical dimerizers using chemistry.. bioRxiv.
Renganathan B, Moore AS, Yeo W-H, Petruncio A, Ackerman D, Wiegel A, Team CM, H. Pasolli A, C. Xu S, Hess HF et al..  2024.  Transport and Organization of Individual Vimentin Filaments Within Dense Networks Revealed by Single Particle Tracking and 3D FIB-SEM. bioRxiv.
Hajji LEl, Bunel B, Joliot O, Li C, Tebo AG, Rampon C, Volovitch M, Fischer E, Pietrancosta N, Perez F et al..  2024.  A tunable and versatile chemogenetic near infrared fluorescent reporter. bioRxiv.
2023
Espinosa-Medina I, Feliciano D, Belmonte-Mateos C, Miyares RLinda, Garcia-Marques J, Foster B, Lindo S, Pujades C, Koyama M, Lee T.  2023.  TEMPO enables sequential genetic labeling and manipulation of vertebrate cell lineages.. Neuron. 111(3):345-361.e10.
Damstra HGJ, Mohar B, Eddison M, Akhmanova A, Kapitein LC, Tillberg PW.  2023.  Ten-fold Robust Expansion Microscopy.. Bio-Protocol. 13(12):e4698.
Biswas T, Li TLambus, Fitzgerald JE.  2023.  Tensor formalism for predicting synaptic connections with ensemble modeling or optimization.. arXiv.
Nardin M, Kaefer K, Stella F, Csicsvari J.  2023.  Theta oscillations as a substrate for medial prefrontal-hippocampal assembly interactions.. Cell Reports. 42(9):113015.
Handler A, Zhang Q, Pang S, Nguyen TM, Iskols M, Nolan-Tamariz M, Cattel S, Plumb R, Sanchez B, Ashjian K et al..  2023.  Three-dimensional reconstructions of mechanosensory end organs suggest a unifying mechanism underlying dynamic, light touch. Neuron.
Nanda A, Johnson GW, Mu Y, Ahrens MB, Chang C, Englot DJ, Breakspear M, Rubinov M.  2023.  Time-resolved correlation of distributed brain activity tracks E-I balance and accounts for diverse scale-free phenomena.. Cell Reports. 42(4):112254.
Lin D, Li X, Moult E, Park P, Tang B, Shen H, Grimm JB, Falco N, Jia BZ, Baker D et al..  2023.  Time-tagged ticker tapes for intracellular recordings.. Nature Biotechnology. 41(5):631-9.
Wu D, Yamada KM, Wang S.  2023.  Tissue Morphogenesis Through Dynamic Cell and Matrix Interactions.. Annual Reviews Cell Developmental Biology.
Martelli F, Ravenscroft TA, Hutchison W, Batterham P.  2023.  Tissue-specific transcriptome analyses in Drosophila provide novel insights into the mode of action of the insecticide spinosad and the function of its target, nAChRα6.. Pest Management Science.
Rzepka N, Bogovic JA, Moore JA.  2023.  Toward scalable reuse of vEM data: OME-Zarr to the rescue.. Methods in Cell Biology. 177:359-387.
Heinrich L, Patton W, Bennett D, Ackerman D, Park G, Bogovic JA, Eckstein N, Petruncio A, Clements J, Pang S et al..  2023.  Towards Generalizable Organelle Segmentation in Volume Electron Microscopy.. Microscopy and Microanalysis. 29(Supplement_1):975.
Cheong H.SJ, Eichler K., Stuerner T., Asinof S.K, Champion A.S, Marin E.C, Oram T.B, Sumathipala M., Venkatasubramanian L., Namiki S. et al..  2023.  Transforming descending input into behavior: The organization of premotor circuits in the Drosophila Male Adult Nerve Cord connectome. bioRxiv.