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Author Title [ Type(Desc)] Year
Journal Article
Tracey B,  Lee N, Turaga S.  2006.  Cluster analysis and robust use of full-field models for sonar beamforming. Journal of Acoustical Society of America . 120(5):2635–2647.
Menon V.  2017.  Clustering single cells: a review of approaches on high-and low-depth single-cell RNA-seq data.. Briefings in Functional Genomics. 17(4):240-45.
Marr MT, Isogai Y, Wright KJ, Tjian R.  2006.  Coactivator cross-talk specifies transcriptional output.. Genes & Development. 20(11):1458-69.
Hu P, Geles KG, Paik J-H, DePinho RA, Tjian R.  2008.  Codependent activators direct myoblast-specific MyoD transcription.. Developmental Cell. 15(4):534-46.
Pershing LK, Chen Y, Tkachuk AN, Rausch HL, Petelenz-Rubin K, Corlett JL, Hobbs MR.  2008.  Coding and non-coding polymorphisms in alcohol dehydrogenase alters protein expression and alcohol-associated erythema.. The Journal of Investigative Dermatology. 128(3):616-27.
Ahammad P, Yeo C, Ramchandran K.  2011.  Coding of image feature descriptors for distributed rate-efficient visual correspondences.. International Journal of Computer Vision. 94:267-81.
Zhang Y, Hoon MA, Chandrashekar J, Mueller KL, Cook B, Wu D, Zuker CS, Ryba NJP.  2003.  Coding of sweet, bitter, and umami tastes: different receptor cells sharing similar signaling pathways.. Cell. 112(3):293-301.
Gallio M, Ofstad TA, Macpherson LJ, Wang JW, Zuker CS.  2011.  The coding of temperature in the Drosophila brain.. Cell. 144(4):614-24.
Stern D, Han C.  2021.  Coding sequence-independent homology search identifies highly divergent homopteran putative effector gene family. bioRxiv.
Massey JH, Rice GR, Firdaus A, Chen C-Y, Yeh S-D, Stern DL, Wittkopp PJ.  2020.  Co-evolving wing spots and mating displays are genetically separable traits in Drosophila.. Evolution. 74(6):1098-1111.
Machielsen R, Looger LL, Raedts J, Dijkhuizen S, Hummel W, Hennemann H‐G, Daussmann T, van der Oost J.  2009.  Cofactor engineering of lactobacillus brevis alcohol dehydrogenase by computational design.. Engineering in Life Sciences. 9(1):38-44.
Rhodes JDP, Haarhuis JHI, Grimm JB, Rowland BD, Lavis LD, Nasmyth KA.  2017.  Cohesin can remain associated with chromosomes during DNA replication.. Cell Reports. 20(12):2749-55.
Katz Y, Kath WL, Spruston N, Hasselmo ME.  2007.  Coincidence detection of place and temporal context in a network model of spiking hippocampal neurons.. PLoS Computational Biology. 3(12):e234.
Gonen T.  2013.  The collection of high-resolution electron diffraction data.. Methods in Molecular Biology. 955:153-169.
Shi D, Nannenga BL, M de la Cruz J, Liu J, Sawtelle S, Calero G, Reyes FE, Hattne J, Gonen T.  2016.  The collection of MicroED data for macromolecular crystallography.. Nature Protocols. 11(5):895-904.
Chou Y-ying, Heaton NS, Gao Q, Palese P, Singer RH, Singer R, Lionnet T.  2013.  Colocalization of different influenza viral RNA segments in the cytoplasm before viral budding as shown by single-molecule sensitivity FISH analysis.. PLoS Pathogens. 9(5):e1003358.
Otsuna H, Ito M, Kawase T.  2018.  Color depth MIP mask search: a new tool to expedite Split-GAL4 creation.. bioRxiv.
Longden KD.  2018.  Colour vision: A fresh view of lateral inhibition in Drosophila.. Current Biology : CB. 28(7):R308-R311.
Schnell B, Raghu SVarija, Nern A, Borst A.  2012.  Columnar cells necessary for motion responses of wide-field visual interneurons in Drosophila.. J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 198(5):389-95.
Shiozaki HM, Wang K, Lillvis JL, Xu M, Dickson BJ, Stern DL.  2023.  Combinatorial circuit dynamics orchestrate flexible motor patterns in Drosophila.. bioRxiv.
Chen X, Jung S, Beh LY, Eddy SR, Landweber LF.  2015.  Combinatorial DNA rearrangement facilitates the origin of new genes in ciliates.. Genome Biology and Evolution. 7(10):2859-70.
Lee AK, Wilson MA.  2004.  A combinatorial method for analyzing sequential firing patterns involving an arbitrary number of neurons based on relative time order.. Journal of Neurophysiology. 92(4):2555-73.
Luan H, White BH.  2007.  Combinatorial methods for refined neuronal gene targeting.. Current Opinion in Neurobiology. 17(5):572-80.
Wu Z, Sweeney LB, Ayoob JC, Chak K, Andreone BJ, Ohyama T, Kerr R, Luo L, Zlatic M, Kolodkin AL.  2011.  A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS.. Neuron. 70(2):281-98.
Maiti AK, Kim-Howard X, Motghare P, Pradhan V, Chua KHeng, Sun C, Arango-Guerrero MTeresa, Ghosh K, Niewold TB, Harley JB et al..  2014.  Combined protein- and nucleic acid-level effects of rs1143679 (R77H), a lupus-predisposing variant within ITGAM.. Human Molecular Genetics. 23(15):4161-76.