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Author Title [ Type(Desc)] Year
Journal Article
Chen T-W, Li N, Daie K, Svoboda K.  2017.  A map of anticipatory activity in mouse motor cortex.. Neuron. 94(4):866-879.e4.
Koyama M, Kinkhabwala A, Satou C, Higashijima S-I, Fetcho J.  2011.  Mapping a sensory-motor network onto a structural and functional ground plan in the hindbrain.. Proceedings of the National Academy of Sciences of the United States of America. 108(3):1170-5.
Simpson JH.  2009.  Mapping and manipulating neural circuits in the fly brain.. Advances in Genetics. 65:79-143.
Freeman J, Vladimirov N, Kawashima T, Mu Y, Sofroniew NJ, Bennett DV, Rosen J, Yang C-T, Looger LL, Ahrens MB.  2014.  Mapping brain activity at scale with cluster computing.. Nature Methods. 11(9):941-950.
Barak O, Romani S.  2021.  Mapping Low-Dimensional Dynamics to High-Dimensional Neural Activity: A Derivation of the Ring Model from the Neural Engineering Framework.. Neural Computation. 33(3):827-52.
Yook C, Druckmann S, Kim J.  2013.  Mapping mammalian synaptic connectivity.. Cellular and Molecular Life Sciences: CMLS. 70(24):4747-57.
Kim D, Park P, Li X, J. Campos DWong, Tian H, Moult EM, Grimm JB, Lavis L, Cohen AE.  2023.  Mapping memories: pulse-chase labeling reveals AMPA receptor dynamics during memory formation.. bioRxiv.
Meissner GW, Nern A, Singer RH, Wong AM, Malkesman O, Long X.  2018.  Mapping Neurotransmitter Identity in the Whole-Mount Brain Using Multiplex High-Throughput Fluorescence Hybridization.. Genetics. 211(2):473-82.
Freeman J, Field GD, Li PH, Greschner M, Gunning DE, Mathieson K, Sher A, Litke AM, Paninski L, Simoncelli EP et al..  2015.  Mapping nonlinear receptive field structure in primate retina at single cone resolution.. eLife. 4
Olman V, Peng H, Su Z, Xu Y.  2004.  Mapping of microbial pathways through constrained mapping of orthologous genes.. Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference. :363-70.
Sanfilippo P, Kim AJ, Bhukel A, Yoo J, Mirshahidi PS, Pandey V, Bevir H, Yuen A, Mirshahidi PS, Guo P et al..  2024.  Mapping of multiple neurotransmitter receptor subtypes and distinct protein complexes to the connectome.. Neuron.
Kim Y, Venkataraju KUmadevi, Pradhan K, Mende C, Taranda J, Turaga SC, Arganda-Carreras I, Ng L, Hawrylycz MJ, Rockland KS et al..  2015.  Mapping social behavior-induced brain activation at cellular resolution in the mouse.. Cell Reports. 10(2):292-305.
Robie AA, Hirokawa J, Edwards AW, Umayam LA, Lee A, Phillips ML, Card GM, Korff W, Rubin GM, Simpson JH et al..  2017.  Mapping the neural substrates of behavior.. Cell. 170(2):393-406.
Sugino K, Clark E, Schulmann A, Shima Y, Wang L, Hunt DL, Hooks BM, Traenkner D, Chandrashekar J, Picard S et al..  2019.  Mapping the transcriptional diversity of genetically and anatomically defined cell populations in the mouse brain.. Elife. 8
Katz ZB, English BP, Lionnet T, Yoon YJ, Monnier N, Ovryn B, Bathe M, Singer RH.  2016.  Mapping translation 'hot-spots' in live cells by tracking single molecules of mRNA and ribosomes.. eLife. 5
Chklovskii DB, Koulakov AA.  2004.  Maps in the brain: what can we learn from them? Annual Review of Neuroscience. 27:369-92.
Amat F, Moussavi F, Comolli LR, Elidan G, Downing KH, Horowitz M.  2008.  Markov random field based automatic image alignment for electron tomography.. Journal of Structural Biology. 161(3):260-75.
Mertens TFabian, Liebheit ATabea, Ehl J, Köhler R, Rakhymzhan A, Woehler A, Katthän L, Ebel G, Liublin W, Kasapi A et al..  2024.  MarShie: a clearing protocol for 3D analysis of single cells throughout the bone marrow at subcellular resolution.. Nature Communincations. 15(1):1764.
Song Q, Smith SA, Gao L, Xu W, Volný M, Ouyang Z, R Cooks G.  2009.  Mass selection of ions from beams using waveform isolation in radiofrequency quadrupoles.. Analytical Chemistry. 81(5):1833-40.
Veesler D, Quispe J, Grigorieff N, Potter CS, Carragher B, Johnson JE.  2012.  Maturation in action: CryoEM study of a viral capsid caught during expansion.. Structure. 20(8):1384-90.
Wen Q, Stepanyants A, Elston GN, Grosberg AY, Chklovskii DB.  2009.  Maximization of the connectivity repertoire as a statistical principle governing the shapes of dendritic arbors.. Proceedings of the National Academy of Sciences of the United States of America. 106(30):12536-41.
Carreira-Rosario A, Zarin AArzan, Clark MQ, Manning L, Fetter RD, Cardona A, Doe CQ.  2018.  MDN brain descending neurons coordinately activate backward and inhibit forward locomotion.. eLife. 7
Romani S, Amit DJ, Mongillo G.  2006.  Mean-field analysis of selective persistent activity in presence of short-term synaptic depression.. Journal of Computational Neuroscience. 20(2):201-17.
Moore TI, Aaron J, Chew T-L, Springer TA.  2018.  Measuring integrin conformational change on the cell surface with super-resolution microscopy.. Cell Reports. 22(7):1903-1912.
Bassett B, Waibel B, White A, Hansen H, Stephens D, Koelper A, Larsen EM, Kim C, Glanzer A, Lavis LD et al..  2018.  Measuring the global substrate specificity of mycobacterial serine hydrolases using a library of fluorogenic ester substrates.. ACS Infectious Diseases. 4(6):904-11.