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Author Title [ Type(Asc)] Year
Journal Article
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B et al..  2012.  Biological imaging software tools.. Nature Methods. 9(7):697-710.
Jug F, Pietzsch T, Preibisch S, Tomancak P.  2014.  Bioimage informatics in the context of Drosophila research.. Methods. 68(1):60-73.
Peng H, Bateman A, Valencia A, Wren JD.  2012.  Bioimage informatics: a new category in Bioinformatics.. Bioinformatics. 28(8):1057.
Peng H.  2008.  Bioimage informatics: a new area of engineering biology.. Bioinformatics. 24(17):1827-36.
van Loo SWolterink-, van Eerde A, Siemerink MAJ, Akerboom J, Dijkstra BW, van der Oost J.  2007.  Biochemical and structural exploration of the catalytic capacity of Sulfolobus KDG aldolases.. The Biochemical Journal. 403(3):421-30.
Chklovskii DB.  2000.  Binocular disparity can explain the orientation of ocular dominance stripes in primate primary visual area (V1).. Vision Research. 40(13):1765-73.
Santos ÁDos, Fili N, Hari-Gupta Y, Gough RE, Wang L, Martin-Fernandez M, Arron J, Wait E, Chew TLeong, Toseland C.  2022.  Binding partners regulate unfolding of myosin VI to activate the molecular motor.. The Biochemical Journal. 479(13):1409-1428.
Reichow SL, Korotkov KV, Gonen M, Sun J, Delarosa JR, Hol WGJ, Gonen T.  2011.  The binding of cholera toxin to the periplasmic vestibule of the type II secretion channel.. Channels. 5(3):215-8.
Wang G, Philip M, McKinley M.  2017.  BIM for Facilities Management: Providing value at the Howard Hughes Medical Institute.. Journal of the National Institute of Building Sciences. 5(3):10-14.
Fu D, Wakabayashi Y, Lippincott-Schwartz J, Arias IM.  2011.  Bile acid stimulates hepatocyte polarization through a cAMP-Epac-MEK-LKB1-AMPK pathway.. Proceedings of the National Academy of Sciences of the United States of America. 108(4):1403-8.
Hörl D, Rusak FRojas, Preusser F, Tillberg P, Randel N, Chhetri RK, Cardona A, Keller PJ, Harz H, Leonhardt H et al..  2019.  BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples.. Nature Methods. 16(9):870-74.
Peng H, Hawrylycz M, Roskams J, Hill S, Spruston N, Meijering E, Ascoli GA.  2015.  BigNeuron: Large-scale 3D neuron reconstruction from optical microscopy images.. Neuron. 87:252-6.
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J et al..  2023.  BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.. Nature Methods. 20(6)
Pietzsch T, Saalfeld S, Preibisch S, Tomancak P.  2015.  BigDataViewer: visualization and processing for large image data sets.. Nature Methods. 12(6):481-3.
Thuma TBT, Bogovic JA, Gunton KB, Jimenez H, Negreiros B, Pulido JS.  2023.  The big warp: Registration of disparate retinal imaging modalities and an example overlay of ultrawide-field photos and en-face OCTA images.. PLoS One. 18(4):e0284905.
Milstein AD, Li Y, Bittner KC, Grienberger C, Soltesz I, Magee JC, Romani S.  2021.  Bidirectional synaptic plasticity rapidly modifies hippocampal representations.. eLife. 10
Hunt DL, Puente N, Grandes P, Castillo PE.  2013.  Bidirectional NMDA receptor plasticity controls CA3 output and heterosynaptic metaplasticity.. Nature Neuroscience. 16(8):1049-59.
Wee CLei, Song EYue, Johnson REvan, Ailani D, Randlett O, Kim J-Y, Nikitchenko M, Bahl A, Yang C-T, Ahrens MB et al..  2019.  A bidirectional network for appetite control in larval zebrafish.. Elife. 8
Zhu S, Wildonger J, Barshow S, Younger S, Huang Y, Lee T.  2012.  The bHLH repressor Deadpan regulates the self-renewal and specification of Drosophila larval neural stem cells independently of Notch.. PLoS One. 7(10):e46724.
Grover D, Nunez-Iglesias J.  2012.  Betamax: towards optimal sampling strategies for high-throughput screens.. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology. 19(6):776-84.
Alewijnse B, Ashton AW, Chambers MG, Chen S, Cheng A, Ebrahim M, Eng ET, Hagen WJH, Koster AJ, Lopez CS et al..  2017.  Best practices for managing large CryoEM facilities.. Journal of Structural Biology. 199(3):225-36.
Spradling AC, Stern D, Beaton A, Rhem EJ, Laverty T, Mozden N, Misra S, Rubin GM.  1999.  The Berkeley Drosophila genome project gene disruption project: single P-element insertions mutating 25% of vital Drosophila genes.. Genetics. 153(1):135-77.
Kent A, Jha AK, Fitzgerald JE, Freed KF.  2008.  Benchmarking implicit solvent folding simulations of the amyloid beta(10-35) fragment.. The journal of physical chemistry. B. 112(19):6175-86.
Lee RM, Eisenman LR, Khuon S, Aaron JS, Chew T-L.  2024.  Believing is seeing - the deceptive influence of bias in quantitative microscopy.. Journal of Cell Science. 137(1)
Haberkern H, Hedwig B.  2016.  Behavioural integration of auditory and antennal stimulation during phonotaxis in the field cricket Gryllus bimaculatus (DeGeer).. The Journal of Experimental Biology. 219(Pt 22):3575-86.