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Bogovic JA, Otsuna H, Heinrich L, Ito M, Jeter J, Meissner GW, Nern A, Colonell J, Malkesman O, Saalfeld S.  2018.  An unbiased template of the Drosophila brain and ventral nerve cord.. bioRxiv.
Bogovic JA, Hanslovsky P, Wong AM, Saalfeld S.  2016.  Robust registration of calcium images by learned contrast synthesis.. IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro.
Boffi NM, Guo Y, Rycroft CH, Amir A.  2024.  How microscopic epistasis and clonal interference shape the fitness trajectory in a spin glass model of microbial long-term evolution. eLife.
Boersma S, Khuperkar D, Verhagen BMP, Sonneveld S, Grimm JB, Lavis LD, Tanenbaum ME.  2019.  Multi-color single molecule imaging uncovers extensive heterogeneity in mRNA decoding.. Cell. 178(2):458-72.
Boehm U, Galbraith CG.  2021.  Extending the performance capabilities of isoSTED.. Biophysical Journal. 120(16):3237-3239.
Boehm U, Nelson G, Brown CM, Bagley S, Bajcsy P, Bischof J, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O et al..  2021.  QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.. Nature Methods.
Bock DD, Lee W-CAllen, Kerlin AM, Andermann ML, Hood G, Wetzel AW, Yurgenson S, Soucy ER, Kim HSuk, R Reid C.  2011.  Network anatomy and in vivo physiology of visual cortical neurons.. Nature. 471(7337):177-82.
Bocarsly ME, Jiang W-C, Wang C, Dudman JT, Ji N, Aponte Y.  2015.  Minimally invasive microendoscopy system for in vivo functional imaging of deep nuclei in the mouse brain.. Biomedical Optics Express. 6(11):4546-56.
Bloss EB, Cembrowski MS, Karsh B, Colonell J, Fetter RD, Spruston N.  2016.  Structured dendritic inhibition supports branch-selective integration in CA1 pyramidal cells.. Neuron.
Bloss EB, Cembrowski MS, Karsh B, Colonell J, Fetter RD, Spruston N.  2018.  Single excitatory axons form clustered synapses onto CA1 pyramidal cell dendrites.. Nature Neuroscience. 21(3):353-63.
Bloss EB, Hunter RG, Waters EM, Munoz C, Bernard K, McEwen BS.  2008.  Behavioral and biological effects of chronic S18986, a positive AMPA receptor modulator, during aging.. Exp Neurol. 210(1):109-17.
Bloss EB, Hunt DL.  2019.  Revealing the synaptic hodology of mammalian neural circuits with multiscale neurocartography.. Frontiers in Neuroinformatics. 13
Bloss EB, Puri R, Yuk F, Punsoni M, Hara Y, Janssen WG, McEwen BS, Morrison JH.  2013.  Morphological and molecular changes in aging rat prelimbic prefrontal cortical synapses.. Neurobiology of Aging. 34(1):200-10.
Bloss EB, Janssen WG, Ohm DT, Yuk FJ, Wadsworth S, Saardi KM, McEwen BS, Morrison JH.  2011.  Evidence for reduced experience-dependent dendritic spine plasticity in the aging prefrontal cortex.. Journal of Neuroscience. 31(21):7831-9.
Blasse C, Saalfeld S, Etournay R, Sagner A, Eaton S, Myers EW.  2017.  PreMosa: Extracting 2D surfaces from 3D microscopy mosaics.. Bioinformatics (Oxford, England). 33(16):2563-9.
Blanc A, Laurent F, Barbier–Chebbah A, Cocanougher BT, Jones BMW, Hague P, Zlatic M, Chikhi R, Vestergaard CL, Jovanic T et al..  2024.  Statistical signature of subtle behavioural changes in large-scale behavioural assays. bioRxiv.
Bittner KC, Milstein AD, Grienberger C, Romani S, Magee JC.  2017.  Behavioral time scale synaptic plasticity underlies CA1 place fields.. Science (New York, N.Y.). 357(6355):1033-1036.
Bittner KC, Grienberger C, Vaidya SP, Milstein AD, Macklin JJ, Suh J, Tonegawa S, Magee JC.  2015.  Conjunctive input processing drives feature selectivity in hippocampal CA1 neurons.. Nature Neuroscience.
Bittner KC, Andrasfalvy BK, Magee JC.  2012.  Ion channel gradients in the apical tuft region of CA1 pyramidal neurons.. PLoS one. 7:e46652.
Biswas T, Bishop WE, Fitzgerald JE.  2020.  Theoretical principles for illuminating sensorimotor processing with brain-wide neuronal recordings.. Current Opinion in Neurobiology. 65:138-145.
Biswas T, Li TLambus, Fitzgerald JE.  2023.  Tensor formalism for predicting synaptic connections with ensemble modeling or optimization.. arXiv.
Biswas T, Fitzgerald JE.  2022.  A geometric framework to predict structure from function in neural networks. Physical Review Research. 4(2):023255.
Bishop C, Matelsky J, Wilt M, Downs J, Rivlin P, Plaza S, Wester B, Gray-Roncal W.  2021.  CONFIRMS: A Toolkit for Scalable, Black Box Connectome Assessment and Investigation.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 2021:2444-2450.
Birman D, Yang KJ, West SJ, Karsh B, Browning Y, Laboratory theInternatio, Siegle JH, Steinmetz NA.  2023.  Pinpoint: trajectory planning for multi-probe electrophysiology and injections in an interactive web-based 3D environment. bioRxiv.
Binns TC, Ayala AX, Grimm JB, Tkachuk AN, Castillon GA, Phan S, Zhang L, Brown TA, Liu Z, Adams SR et al..  2020.  Rational design of bioavailable photosensitizers for manipulation and imaging of biological systems.. Cell Chemical Biology. 27(8):1063-72.