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Funke J, Tschopp FD, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC.  2019.  Large scale image segmentation with structured loss based deep learning for connectome reconstruction.. IEEE Transactions on Pattern Analysis and Machine Intelligence. 41(7):1669-80.
Li B, Bickel RD, Parker BJ, Ziabari OSaleh, Liu F, Vellichirammal NNanoth, Simon J-C, Stern DL, Brisson JA.  2020.  A large genomic insertion containing a duplicated follistatin gene is linked to the pea aphid male wing dimorphism.. eLife. 9
Micheva KD, Wolman D, Mensh BD, Pax E, Buchanan JA, Smith SJ, Bock DD.  2016.  A large fraction of neocortical myelin ensheathes axons of local inhibitory neurons.. eLife.
Sofroniew NJames, Flickinger D, King J, Svoboda K.  2016.  A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.. eLife. 5:e14472.
P Rich D, Liaw H-P, Lee AK.  2014.  Large environments reveal the statistical structure governing hippocampal representations.. Science. 345(6198):814-7.
Hooks BM, S Hires A, Zhang Y-X, Huber D, Petreanu L, Svoboda K, Shepherd GMG.  2011.  Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas.. PLoS Biology. 9(1):e1000572.
Swinburne IA, Mosaliganti KR, Upadhyayula S, Liu T-L, Hildebrand DGC, Tsai TY-C, Chen A, Al-Obeidi E, Fass AK, Malhotra S et al..  2018.  Lamellar projections in the endolymphatic sac act as a relief valve to regulate inner ear pressure.. eLife. 7
Swinburne IA, Mosaliganti KR, Upadhyayula S, Liu T-L, Hildebrand DGC, Tsai TY-C, Chen A, Al-Obeidi E, Fass AK, Malhotra S et al..  2018.  Lamellar junctions in the endolymphatic sac act as a relief valve to regulate inner ear pressure.. eLife.
Nasu Y, Aggarwal A, Le GNT, Vo CTrang, Kambe Y, Wang X, Beinlich FRM, Lee ABomin, Ram TR, Wang F et al..  2023.  Lactate biosensors for spectrally and spatially multiplexed fluorescence imaging.. Nature Communications. 14(1):6598.
Fosque BF, Sun Y, Dana H, Yang C-T, Ohyama T, Tadross MR, Patel R, Zlatic M, Kim DS, Ahrens MB et al..  2015.  Labeling of active neural circuits in vivo with designed calcium integrators.. Science. 347(6223):755-60.
Mohr MAlexander, Argast P, Pantazis P.  2016.  Labeling cellular structures in vivo using confined primed conversion of photoconvertible fluorescent proteins.. Nature Protocols. 11(12):2419-2431.
Liu B, Lee HJeong, Zhang D, Liao C-S, Ji N, Xia Y, Cheng J-X.  2015.  Label-free spectroscopic detection of membrane potential using stimulated Raman scattering.. Applied Physics Letters. 106:173704.
Samolis PD, Langley D, O'Reilly BM, Oo Z, Hilzenrat G, Erramilli S, Sgro AE, McArthur S, Sander MY.  2021.  Label-free imaging of fibroblast membrane interfaces and protein signatures with vibrational infrared photothermal and phase signals.. Biomed Opt Express. 12(1):303-319.
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Minakuchi C, Zhou X, Riddiford LM.  2008.  Krüppel homolog 1 (Kr-h1) mediates juvenile hormone action during metamorphosis of Drosophila melanogaster.. Mechanisms of Development. 125:91-105.
Yu JY, Pettibone JR, Guo C, Zhang S, Saunders TL, Hughes ED, Filipiak WE, Zeidler MG, Bender KJ, Hopf F et al..  2018.  Knock-in rats expressing Cre and Flp recombinases at the Parvalbumin locus.. bioRxiv.
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH.  2009.  Knockdown of parhyale ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.. Proceedings of the National Academy of Sciences of the United States of America. 106:13892-6.
Van HT, Xie G, Dong P, Liu Z, Ge K.  2024.  KMT2 family of H3K4 methyltransferases: enzymatic activity-dependent and -independent functions.. Journal of Molecular Biology. :168453.
Li J, Zaslavsky M, Su Y, Guo J, Sikora MJ, van Unen V, Christophersen A, Chiou S-H, Chen L, Li J et al..  2022.  KIRCD8 T cells suppress pathogenic T cells and are active in autoimmune diseases and COVID-19.. Science. 376(6590):eabi9591.
Cheerambathur DK, Prevo B, Chow T-L, Hattersley N, Wang S, Zhao Z, Kim T, Gerson-Gurwitz A, Oegema K, Green R et al..  2019.  The Kinetochore-Microtubule Coupling Machinery Is Repurposed in Sensory Nervous System Morphogenesis. Developmental Cell. 48:864-872.e7.
Tang X, Li T, Liu S, Wisniewski J, Zheng Q, Rong Y, Lavis LD, Wu C.  2022.  Kinetic principles underlying pioneer function of GAGA transcription factor in live cells.. Nature Structural and Molecular Biology. 29(7):665-676.
Sankaralingam P, Wang S, Liu Y, Oegema KF, O'Connell KF.  2024.  The kinase ZYG-1 phosphorylates the cartwheel protein SAS-5 to drive centriole assembly in C. elegans. EMBO Rep.
Wu J, Liang Y, Chen S, Hsu C-L, Chavarha M, Evans SW, Shi D, Lin MZ, Tsia KK, Ji N.  2020.  Kilohertz two-photon fluorescence microscopy imaging of neural activity in vivo.. Nature Methods. 17(3):287-290.
Wu J, liang Y, Hsu C-L, Chavarha M, Evans S, Shi D, Lin M, Tsia K, Ji N.  2019.  Kilohertz in vivo imaging of neural activity.. bioRxiv.
Kazemipour A, Novak O, Flickinger D, Marvin JS, Abdelfattah AS, King J., Borden PM, Kim JJ, Al-Abdullatif SH, Deal PE et al..  2019.  Kilohertz frame-rate two-photon tomography.. Nature Methods. 16(8):778-86.
Cichon J, Wasilczuk AZ, Looger LL, Contreras D, Kelz MB, Proekt A.  2022.  Ketamine triggers a switch in excitatory neuronal activity across neocortex.. Nature Neuroscience.