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Author Title Type [ Year(Asc)]
2026
Choi H, Halanych C, Kasberg W, Testa MD, Rubin-Elgressy S, Nguyen P, Walpita D, Tsang A, Cortes D, Song EYue et al..  2026.  mRNAbow: A versatile gene expression system for multiplexed fluorescent imaging using optimized in vitro transcribed mRNA. bioRxiv.
Taban D, Jungblut M, Budiarta M, Helmerich DA, Kiesel C, Plutkis SE, Lavis LD, Krah D, Shaib AH, Doose S et al..  2026.  Nanoscale imaging of expanded cells and proteins with spontaneously blinking dyes. bioRxiv.
Taban D, Jungblut M, Budiarta M, Helmerich DA, Kiesel C, Plutkis SE, Lavis LD, Krah D, Shaib AH, Doose S et al..  2026.  Nanoscale imaging of expanded cells and proteins with spontaneously blinking dyes. bioRxiv.
Taban D, Jungblut M, Budiarta M, Helmerich DA, Kiesel C, Plutkis SE, Lavis LD, Krah D, Shaib AH, Doose S et al..  2026.  Nanoscale imaging of expanded cells and proteins with spontaneously blinking dyes. bioRxiv.
Syeda A, Núñez-Ochoa MAngel, Zhong L, Pachitariu M, Stringer C.  2026.  Orofacial behaviors, not eye movements, govern neural activity in mouse visual cortex. bioRxiv.
Bohic M, Salamone PCeleste, Zuo W, Negm A, Fulton SLeilani, Du S, Jayakumar S, Keating J, Soubeyre V, Gradwell MAndrew et al..  2026.  Oxytocin Modulation of Spinal Circuits Drives Therapeutic Benefits of Massage. bioRxiv.
Christie KWilliam, Dadyala TSingh, Sinakevitch ITroufakina, Chung P, Ito M, Shao L.  2026.  A pair of interneurons that assign positive valence to sweet sensation in Drosophila. Curr Bill.
Schuty B, Garcia MJose, Khuon S, Malacrida LS.  2026.  Phasor analysis of RGB camera data enables fluorescence microscopy unmixing and brightfield segmentation in a commercial microscope. bioRxiv.
Valinsky WC, Ray RP, Schaefer KS, Grimm JB, Nicolini C, Lavis LD, Clapham DE.  2026.  Phenotypic CRISPR screens identify NLRX1 as an essential activator of the human mitochondrial permeability transition. Proceedings of the National Academy of Sciences. 123:e2535298123.
Pratt BG, Dallmann CJ, Chou GM, Siwanowicz I, Walling-Bell S, Cook A, Sustar A, Azevedo A, Tuthill JC.  2026.  Proprioceptive limit detectors mediate sensorimotor control of the Drosophila leg. Nat Commun.
Puls OF, Aaron JS, Quarles EK, Khuon S, Eisenman LR, Kamaid A, Malacrida L, Chew T-L.  2026.  Redefining colocalization analysis with a novel phasor mixing coefficient. Journal of Cell Science. 139:jcs264388.
Gándara L, Martelli F, Ravenscroft T, Crocker J, Batterham P.  2026.  Rethinking insecticide toxicology for the 21st century.. Insect Biochem Mol Biol. :104502.
Cheng A, DeWeese T, Zhou Y, Sueoka Y, Koukuntla S, Green M, Cullen K, Knierim J, Graves A, Harris T.  2026.  SCREWx: A Screwless, Chronic, Recoverable, and Lightweight Neuropixels fixture for freely-moving rodents. bioRxiv.
Choi H, Liao Y-C, Yoon YJ, Grimm J, Wang N, Lavis LD, Singer RH, Lippincott-Schwartz J.  2026.  Secretome translation shaped by lysosomes and lunapark-marked ER junctions.. Nature. (649):227–236.
Zhang Y, Ouadah Y, Liu Y, Kumar M, Morck M, Krasnow MA.  2026.  Stem cell control and cancer initiation by an autocrine, injury-activated Igf complex. bioRxiv.
Herrera KJ, Zarghani-Shiraz A, Ahrens MB, Engert F, Fishman MC.  2026.  Synchronization of behavioral and cardiac dynamics in larval zebrafish.. Cell Rep. 45(2):116947.
Muralidharan S, Leng C, Orts L, Trepka E, Zhu S, Panichello M, Jonikaitis D, Pennington J, Pachitariu M, Moore T.  2026.  A System for Live Sorting of Neuronal Spiking Activity from Large-scale Recordings. bioRxiv.
Legorreta EMarquez, Fleishman GM, Hesselink LW, Eddison M, Smeets K, Stringer C, Keller PJ, Narayan S, Chen AB, Mensh BD et al..  2026.  Whole-Brain Co-Mapping of Gene Expression and Neuronal Activity at Cellular Resolution in Behaving Zebrafish. bioRxiv.
2025
Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al..  2025.  Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.
Squires JR, Sun Y, Hoffmann AD, Zhang Y, Minor AC, Singh A, Scholten D, Ding H, Mao C, Platanias LC et al..  2025.  Abstract B049: Deep Learning Enables Identification of Cell Types and Clusters (iCTC) in Immune Tumor Ecosystems for Prognostic Assessment in Cancer. Clinical Cancer Research. 31:B049-B049.
Januszewski M, Templier T, Hayworth KJeffrey, Peale D, Hess H.  2025.  Accelerating Neuron Reconstruction with PATHFINDER. bioRxiv.
Yu Z, Gutu A, Kim N, O’Shea EK.  2025.  Activity-dependent synapse elimination requires caspase-3 activation. eLife.
Schretter CE.  2025.  Aggression across sexes from a contextual- and circuit-based perspective.. Curr Opin Neurobiol. 93:103071.
Shtengel G, Qiu W, Aaron J, Crowe AS, Polilov AA, Karkali K, Bleck CKE, Hess HH.  2025.  Alternating Angle Milling Suppresses Streaking Artifacts in FIB-SEM Imaging. bioRxiv.
Liu H, Squires J, Sun Y, Hoffmann ADaniel, Zhang Y, Platanias LC, Gradishar WJohn, Cristofanilli M, Stringer C.  2025.  Analysis of deep learning for automated recognition of immune cells interacting with CTCs for prognostic assessment in cancer.. Journal of Clinical Oncology. 43:e13028-e13028.