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Journal Article
Giurfa M, Zhang S, Jenett A, Menzel R, Srinivasan MV.  2001.  The concepts of ’sameness’ and ’difference’ in an insect.. Nature. 410(6831):930-3.
Jarsky T, Roxin A, Kath WL, Spruston N.  2005.  Conditional dendritic spike propagation following distal synaptic activation of hippocampal CA1 pyramidal neurons.. Nat Neurosci. 8(12):1667-76.
Abdulkadir SA, Magee JA, Peters TJ, Kaleem Z, Naughton CK, Humphrey PA, Milbrandt J.  2002.  Conditional loss of Nkx3.1 in adult mice induces prostatic intraepithelial neoplasia.. Molecular and Cellular Biology. 22(5):1495-503.
Haustein MD, Kracun S, Lu X-H, Shih T, Jackson-Weaver O, Tong X, Xu J, X Yang W, O’Dell TJ, Marvin JS et al..  2014.  Conditions and constraints for astrocyte calcium signaling in the hippocampal mossy fiber pathway.. Neuron. 82(2):413-29.
Wei Z, Wang X-J.  2015.  Confidence estimation as a stochastic process in a neurodynamical system of decision making.. Journal of Neurophysiology. 114(1):99-113.
Molineros JE, Yang W, Zhou X-J, Sun C, Okada Y, Zhang H, Chua KHeng, Lau Y-L, Kochi Y, Suzuki A et al..  2017.  Confirmation of five novel susceptibility loci for systemic lupus erythematosus (SLE) and integrated network analysis of 82 SLE susceptibility loci.. Human Molecular Genetics. 26(6):1205-1216.
Bishop C, Matelsky J, Wilt M, Downs J, Rivlin P, Plaza S, Wester B, Gray-Roncal W.  2021.  CONFIRMS: A Toolkit for Scalable, Black Box Connectome Assessment and Investigation.. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. 2021:2444-2450.
Liu Y, Pan J, Cai Y, Grigorieff N, Harrison SC, Chen B.  2017.  Conformational states of a soluble, uncleaved HIV-1 envelope trimer.. Journal of Virology. 91(10):e00175-17.
Zheng H, Olia AS, Gonen M, Andrews S, Cingolani G, Gonen T.  2008.  A conformational switch in bacteriophage p22 portal protein primes genome injection.. Molecular Cell. 29(3):376-83.
Park J, Polidoro P, Fortunato C, Arnold J, Mensh B, Gallego JA, Dudman JT.  2023.  Conjoint specification of action by neocortex and striatum.. bioRxiv.
Bittner KC, Grienberger C, Vaidya SP, Milstein AD, Macklin JJ, Suh J, Tonegawa S, Magee JC.  2015.  Conjunctive input processing drives feature selectivity in hippocampal CA1 neurons.. Nature Neuroscience.
Clemens J, Girardin CC, Coen P, Guan X-J, Dickson BJ, Murthy M.  2015.  Connecting neural codes with behavior in the auditory system of Drosophila.. Neuron. 87(6):1332-43.
Finkelstein A, Daie K, Rózsa M, Darshan R, Svoboda K.  2023.  Connectivity underlying motor cortex activity during naturalistic goal-directed behavior.. bioRxiv.
Scheffer LK, C Xu S, Januszewski M, Lu Z, Takemura S-ya, Hayworth KJ, Huang GB, Shinomiya K, Maitlin-Shepard J, Berg S et al..  2020.  A connectome and analysis of the adult Drosophila central brain.. Elife. 9
Tschopp FD, Reiser MB, Turaga SC.  2018.  A connectome based hexagonal lattice convolutional network model of the Drosophila visual system.. arXiv. :1806.04793.
Scheffer LK, Meinertzhagen IA.  2021.  A connectome is not enough - what is still needed to understand the brain of Drosophila? The Journal of Experimental Biology. 224(21)
Takemura S-ya, Aso Y, Hige T, Wong AM, Lu Z, C Xu S, Rivlin PK, Hess HF, Zhao T, Parag T et al..  2017.  A connectome of a learning and memory center in the adult Drosophila brain.. eLife. 6:e26975.
Winding M, Pedigo BD, Barnes CL, Patsolic HG, Park Y, Kazimiers T, Fushiki A, Andrade IV, Khandelwal A, Valdes-Aleman J et al..  2022.  The connectome of an insect brain. bioRxiv.
Li F, Lindsey JW, Marin EC, Otto N, Dreher M, Dempsey G, Stark I, Bates AS, Pleijzier MWilliam, Schlegel P et al..  2020.  The connectome of the adult mushroom body provides insights into function.. eLife. 9
Hulse BK, Haberkern H, Franconville R, Turner-Evans DB, Takemura S-ya, Wolff T, Noorman M, Dreher M, Dan C, Parekh R et al..  2021.  A connectome of the central complex reveals network motifs suitable for flexible navigation and context-dependent action selection.. eLife. 10
Takemura S-ya.  2015.  Connectome of the fly visual circuitry.. Microscopy. 64(1):37-44.
Takemura S-ya, Hayworth KJ, Huang GB, Januszewski M, Lu Z, Marin EC, Preibisch S, C Xu S, Bogovic J, Champion AS et al..  2023.  A Connectome of the Male Drosophila Ventral Nerve Cord. bioRxiv.
Meinertzhagen IA.  2016.  Connectome studies on Drosophila: a short perspective on a tiny brain.. Journal of Neurogenetics. 30(2):62-8.
Lappalainen JK, Tschopp FD, Prakhya S, McGill M, Nern A, Shinomiya K, Takemura S-ya, Gruntman E, Macke JH, Turaga SC.  2024.  Connectome-constrained networks predict neural activity across the fly visual system. Nature.
Nern A, Loesche F, Takemura S-ya, Burnett LE, Dreher M, Gruntman E, Hoeller J, Huang GB, Januszewski M, Klapoetke NC et al..  2024.  Connectome-driven neural inventory of a complete visual system. bioRxiv.