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A
Alhadeff AL, Su Z, Hernandez E, Klima ML, Phillips SZ, Holland RA, Guo C, Hantman AW, De Jonghe BC, J Betley N.  2018.  A Neural Circuit for the Suppression of Pain by a Competing Need State.. Cell. 173(1):140-52.
Alicea I, Marvin JS, Miklos AE, Ellington AD, Looger LL, Schreiter ER.  2011.  Structure of the escherichia coli phosphonate binding protein PhnD and rationally optimized phosphonate biosensors.. Journal of Molecular Biology. 414(3):356-69.
A Alivisatos P, Andrews AM, Boyden ES, Chun M, Church GM, Deisseroth K, Donoghue JP, Fraser SE, Lippincott-Schwartz J, Looger LL et al..  2013.  Nanotools for neuroscience and brain activity mapping.. ACS Nano. 7(3):1850-66.
A Alivisatos P, Andrews AM, Boyden ES, Chun M, Church GM, Deisseroth K, Donoghue JP, Fraser SE, Lippincott-Schwartz J, Looger LL et al..  2013.  Nanotools for neuroscience and brain activity mapping.. ACS nano. 7(3):1850-66.
Allen PB, Sgro AE, Chao DL, Doepker BE, J Edgar S, Shen K, Chiu DT.  2008.  Single-synapse ablation and long-term imaging in live C. elegans.. J Neurosci Methods. 173(1):20-6.
Allen WE, Chen MZ, Pichamoorthy N, Tien RH, Pachitariu M, Luo L, Deisseroth K.  2019.  Thirst regulates motivated behavior through modulation of brainwide neural population dynamics.. Science. 364(6437):253.
Allier C, Schneider MC, Innerberger M, Heinrich L, Bogovic JA, Saalfeld S.  2024.  Decomposing heterogeneous dynamical systems with graph neural networks. arXiv.
Allison R, Edgar JR, Pearson G, Rizo T, Newton T, Günther S, Berner F, Hague J, Connell JW, Winkler J et al..  2017.  Defects in ER-endosome contacts impact lysosome function in hereditary spastic paraplegia.. The Journal of Cell Biology. 216(5):1337-55.
Almahayni K, Spiekermann M, Fiore A, Yu G, Pedram K, Möckl L.  2022.  Small molecule inhibitors of mammalian glycosylation.. Matrix Biology Plus. 16:100108.
Almeida-Carvalho MJ, Berh D, Braun A, Chen Y-chun, Eichler K, Eschbach C, Fritsch PMJ, Gerber B, Hoyer N, Jiang X et al..  2017.  The Ol1mpiad: concordance of behavioural faculties of stage 1 and stage 3 Drosophila larvae.. The Journal of Experimental Biology. 220(Pt 13):2452-2475.
Altschul SF, Gish W, Miller W., Myers EW, Lipman DJ.  1990.  Basic local alignment search tool.. Journal of Molecular Biology. 215(3):403-10.
Alushin GM, Ramey VH, Pasqualato S, Ball DA, Grigorieff N, Musacchio A, Nogales E.  2010.  The Ndc80 kinetochore complex forms oligomeric arrays along microtubules.. Nature. 467(7317):805-10.
Alves D, Arkani-Hamed N, Arora S, Bai Y, Baumgart M, Berger J, Buckley M, Butler B, Chang S, Cheng H-C et al..  2012.  Simplified models for LHC new physics searches. Journal of Physics G: Nuclear and Particle Physics. 39(10):105005.
Amadei G, Handford CE, Qiu C, De Jonghe J, Greenfeld H, Tran M, Martin BK, Chen D-Y, Aguilera-Castrejon A, Hanna JH et al..  2022.  Embryo model completes gastrulation to neurulation and organogenesis.. Nature. 610(7930):143-153.
Amaravadi RK, Lippincott-Schwartz J, Yin X-M, Weiss WA, Takebe N, Timmer W, DiPaola RS, Lotze MT, White E.  2011.  Principles and current strategies for targeting autophagy for cancer treatment.. Clinical cancer research : an official journal of the American Association for Cancer Research. 17(4):654-66.
Amat F, Myers EW, Keller PJ.  2013.  Fast and robust optical flow for time-lapse microscopy using super-voxels.. Bioinformatics. 29(3):373-80.
Amat F, Moussavi F, Comolli LR, Elidan G, Downing KH, Horowitz M.  2008.  Markov random field based automatic image alignment for electron tomography.. Journal of Structural Biology. 161(3):260-75.
Amat F, Comolli LR, Nomellini JF, Moussavi F, Downing KH, Smit J, Horowitz M.  2010.  Analysis of the intact surface layer of Caulobacter crescentus by cryo-electron tomography.. Journal of Bacteriology. 192(22):5855-65.
Amat F, Castaño-Diez D, Lawrence A, Moussavi F, Winkler H, Horowitz M.  2010.  Alignment of cryo-electron tomography datasets.. Methods in Enzymology. 482:343-67.
Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ.  2014.  Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data.. Nature Methods. 11(9):951-8.
Amat F, Keller PJ.  2013.  3D Haar-like elliptical features for object classification in microscopy.. International Symposium on Biomedical Imaging.
Amat F, Höckendorf B, Wan Y, Lemon WC, McDole K, Keller PJ.  2015.  Efficient processing and analysis of large-scale light-sheet microscopy data.. Nature Protocols. 10(11):1679-96.
Amat F, Keller PJ.  2013.  Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy.. Development, Growth and Differentiation. 55(4):563-78.
Amat F, Comolli LR, Moussavi F, Smit J, Downing KH, Horowitz M.  2010.  Subtomogram alignment by adaptive Fourier coefficient thresholding.. Journal of Structural Biology. 171(3):332-44.
Amit DJ, Romani S.  2007.  Search for fMRI BOLD signals in networks of spiking neurons.. European Journal of Neuroscience. 25(6):1882-92.