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Journal Article
Hu YS, Nan X, Sengupta P, Lippincott-Schwartz J, Cang H.  2013.  Accelerating 3B single-molecule super-resolution microscopy with cloud computing.. Nature methods. 10(2):96-7.
Eddy SR.  2011.  Accelerated profile HMM searches.. PLoS Computational Biology. 7(10):e1002195.
Hubbard PM, Berg S, Zhao T, Olbris DJ, Umayam L, Maitin-Shepard J, Januszewski M, Katz WT, Neace ER, Plaza SM.  2020.  Accelerated EM Connectome Reconstruction using 3D Visualization and Segmentation Graphs. bioRxiv.
Proskurin M, Manakov M, Karpova AY.  2023.  ACC neural ensemble dynamics are structured by strategy prevalence. eLife.
Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al..  2025.  Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.
Kim YJin, Grimm JB, Lee D.  2007.  Absence of the Thorpe-Ingold Eet by gem-diphenyl groups in ring-closing enyne metathesis.. Tetrahedron Letters. 48(45):7961-4.
Kivimäe S, Martin P-M, Kapfhamer D, Ruan Y, Heberlein U, Rubenstein JLR, Cheyette BNR.  2011.  Abnormal behavior in mice mutant for the Disc1 binding partner, Dixdc1.. Translational Psychiatry. 1:e43.
Meinhardt J, Sachse C, Hortschansky P, Grigorieff N, Fändrich M.  2009.  Abeta(1-40) fibril polymorphism implies diverse interaction patterns in amyloid fibrils.. Journal of Molecular Biology. 386(3):869-77.
Tian L, Or G, Wang Y, Shi G, Wang Y, Sun J, Papadopoulos S, Broussard G, Unger E, Deng W et al..  2018.  Aberrant calcium signaling in astrocytes inhibits neuronal excitability in a human Down syndrome stem cell model.. Cell Reports. 24(2):355-65.
Bussell JJ, Yapici N, Zhang SX, Dickson BJ, Vosshall LB.  2014.  Abdominal-B neurons control Drosophila virgin female receptivity.. Current Biology. 24(14):1584-95.
Sawaya MR, Rodriguez J, Cascio D, Collazo MJ, Shi D, Reyes FE, Hattne J, Gonen T, Eisenberg DS.  2016.  Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.. Proceedings of the National Academy of Sciences of the United States of America. 113(40):11232-6.
Lu R, Tanimoto M, Koyama M, Na J.  2018.  50 Hz volumetric functional imaging with continuously adjustable depth of focus.. Biomedical Optics Express. 9(4):1964-76.
Schöneberg J, Dambournet D, Liu T-L, Forster R, Hockemeyer D, Betzig E, Drubin DG.  2018.  4D cell biology: big data image analytics and lattice light-sheet imaging reveal dynamics of clathrin-mediated endocytosis in stem cell derived intestinal organoids.. Molecular Biology of the Cell. :mbcE18060375.
Diakova AV, Makarova AA, Pang S, C Xu S, Hess H, Polilov AA.  2022.  The 3D ultrastructure of the chordotonal organs in the antenna of a microwasp remains complex although simplified.. Scientific Reports. 12(1):20172.
Moussavi F, Heitz G, Amat F, Comolli LR, Koller D, Horowitz M.  2010.  3D segmentation of cell boundaries from whole cell cryogenic electron tomography volumes.. Journal of Structural Biology. 170(1):134-45.
Dworzak J, Lamecker H, von Berg J, Klinder T, Lorenz C, Kainmüller D, Seim H, Hege H-C, Zachow S.  2010.  3D reconstruction of the human rib cage from 2D projection images using a statistical shape model.. International journal of computer assisted radiology and surgery. 5(2):111-24.
Vijayakumaran A, Godbehere C, Abuammar A, Breusegem SY, Hurst LR, Morone N, Llodra J, Dalbay MT, Tanvir NM, MacLellan-Gibson K. et al..  2024.  3D nanoscale architecture of the respiratory epithelium reveals motile cilia-rootlets-mitochondria axis of communication. bioRxiv.
Gao L, Shao L, Chen B-C, Betzig E.  2014.  3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy.. Nature Protocols. 9:1083-101.
Liu Z, Legant WR, Chen B-C, Li L, Grimm JB, Lavis LD, Betzig E, Tjian R.  2014.  3D imaging of Sox2 enhancer clusters in embryonic stem cells.. eLife. 3
Müller A, Schmidt D, C Xu S, Pang S, D'Costa JVerner, Kretschmar S, Münster C, Kurth T, Jug F, Weigert M et al..  2021.  3D FIB-SEM reconstruction of microtubule-organelle interaction in whole primary mouse β cells.. Journal of Cell Biology. 220(2)
Long F, Peng H, Liu X, Kim SK, Myers E.  2009.  A 3D digital atlas of C. elegans and its application to single-cell analyses.. Nature Methods. 6:667-72.
Griffié J, Shlomovich L, Williamson DJ, Shannon M, Aaron J, Khuon S, Burn GL, Boelen L, Peters R, Cope AP et al..  2017.  3D Bayesian cluster analysis of super-resolution data reveals LAT recruitment to the T cell synapse.. Scientific Reports. 7(1):4077.
Xie L, Dong P, Chen X, Hsieh T-HS, Banala S, De Marzio M, English BP, Qi Y, Jung SKyoung, Kieffer-Kwon K-R et al..  2020.  3D ATAC-PALM: super-resolution imaging of the accessible genome.. Nature Methods. 17(4):430-6.
Nikolaev YA, Ziolkowski LH, Pang S, Li W-P, Feketa VV, C. Xu S, Gracheva EO, Bagriantsev SN.  2023.  3D architecture and a bi-cellular mechanism of touch detection in mechanosensory corpuscle. Science Advances. 9(37):eadi4147.
Banala S, Tkachuk AN, Patel R, Kumar P, Brown TA, Lavis LD.  2022.  2,7-Diaminobenzopyrylium Dyes Are Live-Cell Mitochondrial Stains2,7-Diaminobenzopyrylium Dyes Are Live-Cell Mitochondrial Stains. ACS Bio & Med Chem Au. 2(3):307-12.