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2024
Allier C, Schneider MC, Innerberger M, Heinrich L, Bogovic JA, Saalfeld S.  2024.  Decomposing heterogeneous dynamical systems with graph neural networks. arXiv.
Park P, J. Wong-Campos D, Itkis D, Lee BHun, Qi Y, Davis HC, Grimm JB, Plutkis SE, Lavis L, Cohen AEzra.  2024.  Dendritic voltage imaging maps the biophysical basis of plateau potentials in the hippocampus. bioRxiv.
Sabarís G, Ortíz DM, Laiker I, Mayansky I, Naik S, Cavalli G, Stern DL, Ben Noon EPreger-, Frankel N.  2024.  The density of regulatory information is a major determinant of evolutionary constraint on non-coding DNA in Drosophila. Molecular Biology and Evolution. 41(2):msae004.
Bailly R, Malfante M, Allier C, Paviolo C, Ghenim L, Padmanabhan K, Bardin S, Mars J.  2024.  Detecting abnormal cell behaviors from dry mass time series. Scientific Reports. 14(1)
Yu X, Lu D, Qi X, Lin H, Holloman BL, Jin F, Xu L, Ding L, Peng W, Wang MC et al..  2024.  Development of a First-in-Class RIPK1 Degrader to Enhance Antitumor Immunity. Nat Commun. 15(1):10683.
Vickers P, Adamo L, Alfano M, Clark C, Cresto E, Cui H, Dang H, Dellsén F, Dupin N, Gradowski L et al..  2024.  Development of a novel methodology for ascertaining scientific opinion and extent of agreement.. PLoS One. 19(12):e0313541.
Phan TV, Mattingly HH, Vo L, Marvin JS, Looger LL, Emonet T.  2024.  Direct measurement of dynamic attractant gradients reveals breakdown of the Patlak-Keller-Segel chemotaxis model. Proceedings of the National Academy of Sciences.
Team TMouseLight, Ferreira TA, Eddison M, Copeland M, Lay M, Tenshaw E, Weldon M, Schauder D, Olbris DJ, Rokicki K et al..  2024.  Discovery of neuronal cell types by pairing whole cell reconstructions with RNA expression profiles. bioRxiv.
Patel A, Gonzalez V, Menon T, Shvartsman SY, Burdine R, Avdeeva M.  2024.  Disrupted developmental signaling induces novel transcriptional states. bioRxiv.
Beltrán FA, L LTorres-Dí, Troncoso-Escudero P, Villalobos-González J, Mayorga-Weber G, Lara M, Covarrubias-Pinto A, Valdivia S, Vicencio I, Papic E et al..  2024.  Distinct roles of ascorbic acid in extracellular vesicles and free form: Implications for metabolism and oxidative stress in presymptomatic Huntington's disease.. Free Radic Biol Med. 227:521-535.
Zhong L, Baptista S, Gattoni R, Arnold J, Flickinger D, Stringer C, Pachitariu M.  2024.  Distinct streams for supervised and unsupervised learning in the visual cortex. bioRxiv.
Jacob LPL, Bailes SM, Williams SD, Stringer C, Lewis LD.  2024.  Distributed fMRI dynamics predict distinct EEG rhythms across sleep and wakefulness.. bioRxiv.
Chou HTing, Valencia F, Alexander JC, Bell ADavis, Deb D, Pollard DA, Paaby AB.  2024.  Diversification of small RNA pathways underlies germline RNA interference incompetence in wild Caenorhabditis elegans strains.. Genetics. 226(1)
Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CHyuk, Yu S, Kim JS et al..  2024.  A Drosophila computational brain model reveals sensorimotor processing.. Nature. 634(8032):210-219.
Kim JMin, Carcamo CC, Jazani S, Xie Z, Feng XA, Poyton M, Holland KL, Grimm JB, Lavis LD, Ha T et al..  2024.  Dynamic 1D Search and Processive Nucleosome Translocations by RSC and ISW2 Chromatin Remodelers. eLife.
Huang Y-C, Chen H-C, Lin Y-T, Lin S-T, Zheng Q, Abdelfattah AS, Lavis LD, Schreiter ER, Lin B-J, Chen T-W.  2024.  Dynamic assemblies of parvalbumin interneurons in brain oscillations.. Neuron.
Xia M, Lu J, Lan J, Teng T, Shiao R, Sun H, Jin Z, Liu X, Wang J, Wu H et al..  2024.  Elevated IL-22 as a result of stress-induced gut leakage suppresses septal neuron activation to ameliorate anxiety-like behavior.. Immunity. :S1074-7613(24)00523-5.
Banala S, Jin X-T, Dilan TL, Sheu S-H, Clapham DE, Drenan RM, Lavis LD.  2024.  Elucidating and Optimizing the Photochemical Mechanism of Coumarin-Caged Tertiary Amines.. J Am Chem Soc.
Flierman NA, Koay SAnn, van Hoogstraten WS, Ruigrok TJH, Roelfsema PR, Badura A, De Zeeuw CI.  2024.  Encoding of cerebellar dentate neuronal activity during visual attention in rhesus macaques. bioRxiv.
Davidsen K, Marvin JS, Aggarwal A, Brown TA, Sullivan LB.  2024.  An engineered biosensor enables dynamic aspartate measurements in living cells.. Elife. 12
Sendra M, McDole K, Jimenez-Carretero D, Hourcade Jde Dios, Temiño S, Guignard L, Keller PJ, Sánchez-Cabo F, Domínguez JN, Torres M.  2024.  Epigenetic priming of embryonic lineages in the mammalian epiblast. bioRxiv.
Franzelin A, Lamothe-Molina PJ, Gee CE, Formozov A, Schreiter ER, Morellini F, Oertner TGlenn.  2024.  Epigenetic repression of cFos supports sequential formation of distinct spatial memories.. bioRxiv.
Giancola JLB, Grimm JB, Jun JV, Petri YD, Lavis LD, Raines RT.  2024.  Evaluation of the Cytosolic Uptake of HaloTag Using a pH-Sensitive Dye. ACS Chemical Biology.
Bondarenko K, Limoge F, Pedram K, Gissot M, Young JC.  2024.  Expansion of in vitro Toxoplasma gondii cysts using enzymatically enhanced ultrastructure expansion microscopy. mSphere. e0032224
Goldschmidt D, Guo Y, Chitnis SS, Christoforou C, Turner-Evans D, Ribeiro C, Hermundstad AM, Jayaraman V, Haberkern H.  2024.  Exploration and exploitation are flexibly balanced during local search in flies. bioRxiv.