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2026
Biletch EB, Herlihy CP, Li L, Krebs M, Kelly CJ, Longhi NJ, Weissenfels O, Goldberg HG, Brandt K, Grimm JB et al..  2026.  A unified photosensitizer platform for in situ DNA-, RNA-, and protein-directed proximity labeling. bioRxiv.
Manakov M, Proskurin M, Wang H, Kuleshova E, Lustig A, Behnam R, Druckmann S, D. Tervo GR, Koay SAnn, Karpova AY.  2026.  Universal geometry of compositional construction in prefrontal cortex. bioRxiv.
Abidi AA, Cattoglio C, Tang NN, Fan VB, Dailey GM, Hay AD, Kunamaneni P, Milkie DE, Darzacq X, Betzig E et al..  2026.  Unstructured transcription factor interactions enable emergent specificity.. Science. :eaeb6487.
Umney O, Curd APaul, Martin H, Lewis T, San Tang AAh-, Balusubramanian H, Khuon S, Aaron J, Peckham M.  2026.  Using iPALM to determine protein organisation in cardiac muscle Z-discs. bioRxiv.
Hobson CM, Puls OF, Aaron JS, Denans N, Schmidt A, Farrants H, Schreiter ER, Chew T-L.  2026.  vFLIM: Machine Learning-enabled Light Sheet Fluorescence Lifetime Imaging. bioRxiv.
J Wong-Campos D, Park P, Lee BHun, Davis HC, Qi Y, Tian H, Itkis DG, Kim D, Grimm JB, Plutkis SE et al..  2026.  Voltage dynamics of cortical dendrites in vivo. Nat Neurosci. 29(8):1885-1893.
Wu D, E. Morales A, Lee J, Pangeni S, Farrants H, Hutchings KA, Barndt RJ, Yu Q, Li X, Shroff H et al..  2026.  WHaloForce enables chemigenetic imaging of molecular tension in living cells and animals. bioRxiv.
Carbo-Tano M, Fidelin K, Welch T, Narayan S, Ahrens M, Dubuc R, Wyart C.  2026.  Whole brain mapping of spinal-projecting neurons in larval zebrafish. eLife.
Ispizua JI, Abe ETT, Yan J, Othayoth R, Sawtelle S, Atkins F, Shiozaki H, Meier NR, Wong J, Tran TT et al..  2026.  Whole-body 3D kinematics of freely behaving Drosophila. bioRxiv.
Chen W, James B, Ruetten VMS, Banala S, Wei Z, Yang X, Fleishman G, Siwanowicz I, Rubinov M, Delahanty J et al..  2026.  Whole-brain, all-optical interrogation of neuronal dynamics underlying gut and vascular interoception in zebrafish. Nature Communications.
Chen W, James B, Ruetten VMS, Banala S, Wei Z, Yang X, Fleishman G, Siwanowicz I, Rubinov M, Delahanty J et al..  2026.  Whole-brain, all-optical interrogation of neuronal dynamics underlying gut and vascular interoception in zebrafish. Nature Communications.
Legorreta EMarquez, Fleishman GM, Hesselink LW, Eddison M, Smeets K, Stringer C, Keller PJ, Narayan S, Chen AB, Mensh BD et al..  2026.  Whole-brain co-mapping of gene expression and neuronal activity at cellular resolution in behaving zebrafish. bioRxiv.
Grassick AG, Hsu JTze-Hou, Lin E, Liu Z, Whitton M, Hair M, Gutierrez L, Yu H, Branson K, Jayaraman V et al..  2026.  WildFin: An In-the-Wild Dataset for Fish Behavioral Recognition. arXiv.
Dong Y, Yang Z, Schneider M, Scherzer O, Schuetz G.  2026.  A workflow for the identification of oligomeric structures on tilted sample planes in Cryo-SMLM. Optics.
Dong Y, Yang Z, Schneider MC, Scherzer O, Schütz GJ.  2026.  A workflow for the identification of oligomeric structures on tilted sample planes in Cryo-SMLM. bioRxiv.
Woloschuk RM, G Woolley A.  2026.  A Yeast Two-Hybrid Assay to Develop Optogenetic Tools for Controlling Protein-Protein Interactions.. Methods Mol Biol. 3032:69-83.
2025
Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al..  2025.  Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.
Squires JR, Sun Y, Hoffmann AD, Zhang Y, Minor AC, Singh A, Scholten D, Ding H, Mao C, Platanias LC et al..  2025.  Abstract B049: Deep learning enables identification of cell types and clusters (iCTC) in immune tumor ecosystems for prognostic assessment in cancer. Clinical Cancer Research. 31:B049-B049.
Januszewski M, Templier T, Hayworth KJeffrey, Peale D, Hess H.  2025.  Accelerating neuron reconstruction with PATHFINDER. bioRxiv.
Yu Z, Gutu A, Kim N, O’Shea EK.  2025.  Activity-dependent synapse elimination requires caspase-3 activation. eLife.
Schretter CE.  2025.  Aggression across sexes from a contextual- and circuit-based perspective.. Curr Opin Neurobiol. 93:103071.
Shtengel G, Qiu W, Aaron J, Crowe AS, Polilov AA, Karkali K, Bleck CKE, Hess HH.  2025.  Alternating angle milling suppresses streaking artifacts in FIB-SEM imaging. bioRxiv.
Liu H, Squires J, Sun Y, Hoffmann ADaniel, Zhang Y, Platanias LC, Gradishar WJohn, Cristofanilli M, Stringer C.  2025.  Analysis of deep learning for automated recognition of immune cells interacting with CTCs for prognostic assessment in cancer.. Journal of Clinical Oncology. 43:e13028-e13028.
Charvat AF, Mason-Chalmers K, Grabinska-Rogala A, Shivakumar S, Gale-Day Z, Wu T, Millbern Z, Grimm J, Carroll EC, Nilsson P et al..  2025.  Aurora 2.0: A fluorogenic dye library for expanding the capability of protein-adaptive Differential Scanning Fluorimetry (paDSF).. SLAS Discov. :100259.
Hillsley A, Stein J, Tillberg PW, Stern DL, Funke J.  2025.  A Bayesian model to count the number of two-state emitters in a diffraction limited spot.. Nano Lett.