Biblio

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2025
Guo Y, Hermundstad AM.  2025.  Efficient planning and implementation of optimal foraging strategies under energetic constraints. PNAS Nexus.
Hernandez-Nunez L, Avrami J, Shi S, Markarian A, Ruetten VMS, Boulanger-Weill J, Zarghani-Shiraz A, Ahrens M, Engert F, Fishman MC.  2025.  Emergence of Functional Heart-Brain Circuits in a Vertebrate.. eLife.
Flierman NA, Koay SAnn, van Hoogstraten WS, Ruigrok TJH, Roelfsema P, Badura A, De Zeeuw CI.  2025.  Encoding of cerebellar dentate neuron activity during visual attention in rhesus macaques.. Elife. 13
Di Fratta G, Innerberger M, Praetorius D, Slastikov V.  2025.  Energy minimization for skyrmions on planar thin films. arXiv.
Guo Y, Hermundstad AM.  2025.  Environmental dynamics impact whether matching is optimal. PNAS Nexus. :pgaf392.
Kim D, Park P, Li X, J Wong-Campos D, Tian H, Moult EM, Grimm JB, Lavis LD, Cohen AE.  2025.  EPSILON: A method for pulse-chase labeling to probe synaptic AMPAR exocytosis during memory formation.. Nat Neurosci.
Joo JHyuck, Kasberg W, Douglas S, Udoh U, Carisey A, Messing J, Wang Y-D, Narina S, Pruett-Miller SM, Labelle M et al..  2025.  ER-to-Golgi trafficking is a nutrient-sensitive checkpoint linking glucose starvation to cell surface remodeling. bioRxiv.
Tadres D, Shiozaki HM, Tastekin I, Stern DL, Louis M.  2025.  An essential experimental control for functional connectivity mapping with optogenetics.. Genetics. 231(3)
Yoo J, Xie F, Butrus S, Xu R, Tan Z, Gorzek R, Mirshahidi P, Tring E, Suresh S, Kim J et al..  2025.  Establishing a continuum of cell types in the visual cortex. bioRxiv.
Moret A, Farrants H, Fan R, Zingg KG, Silva B, Roselli C, Oertner TG, Gee CE, Hadjieconomou D, Rangaraju V et al..  2025.  An expanded palette of bright and photostable organellar Ca2+ sensors. eLife.
Dalangin R, Jia BZ, Qi Y, Aggarwal A, Sakoi K, Drobizhev M, Molina RS, Patel R, Abdelfattah AS, Zheng J et al..  2025.  Far-red fluorescent genetically encoded calcium ion indicators.. Nat Commun. 16(1):3318.
Mi X, Chen ABo-Yuan, Duarte D, Carey E, Taylor CR, Braaker PN, Bright M, Almeida RG, Lim J-X, Ruetten VMS et al..  2025.  Fast, accurate, and versatile data analysis platform for the quantification of molecular spatiotemporal signals.. Cell.
Moore AS, Krug T, Hansen SB, Ludlow AV, Grimm JB, Ayala AX, Plutkis SE, Wang N, Goldman RD, Medalia O et al..  2025.  FilaBuster: A strategy for rapid, specific, and spatiotemporally controlled intermediate filament disassembly. bioRxiv.
Makarova AA, Chua NJ, Diakova AV, Desyatirkina IA, Gunn P, Pang S, C Xu S, Hess HF, Chklovskii DB, Polilov AA.  2025.  The first complete 3D reconstruction and morphofunctional mapping of an insect eye. eLife.
Makarova AA, Chua NJ, Diakova AV, Desyatirkina IA, Gunn P, Pang S, C Xu S, Hess H, Chklovskii DB, Polilov AA.  2025.  The first complete 3D reconstruction and morphofunctional mapping of an insect eye.
Vohra SK, Eberle M, Boulanger-Weill J, Petkova MD, Schuhknecht GFP, Herrera KJ, Kämpf F, Ruetten VMS, Lichtman JW, Engert F et al..  2025.  Fishexplorer: A multimodal cellular atlas platform for neuronal circuit dissection in larval zebrafish. bioRxiv.
Grima LL, Haberkern H, Mohanta R, Morimoto MM, Rajagopalan AE, Scholey EV.  2025.  Foraging as an ethological framework for neuroscience.. Trends Neurosci.
Averbukh M, Nelson H, Wang T, Lange CM, Alcala A, Nair T, Kim J, Suh D, Vega M, Gao SMax et al..  2025.  Form and function of actin impacts actin health and aging. bioRxiv.
Alshaabi T, Milkie D, Liu G, Shirazinejad C, Hong J, Achour K, Görlitz F, Milunovic-Jevtic A, Simmons C, Abuzahriyeh I et al..  2025.  Fourier-Based 3D Multistage Transformer for Aberration Correction in Multicellular Specimens. Research Square.
Alshaabi T, Milkie DE, Liu G, Shirazinejad C, Hong JL, Achour K, Görlitz F, Milunovic-Jevtic A, Simmons C, Abuzahriyeh IS et al..  2025.  Fourier-based three-dimensional multistage transformer for aberration correction in multicellular specimens.. Nat Methods.
Jacob LPL, Bailes SM, Stringer C, Polimeni JR, Lewis LD.  2025.  Functional MRI signals as fast as 1Hz are coupled to brain states and predict spontaneous neural activity. bioRxiv.
Sakthivelu V, Schmitt A, Odenthal F, Ndoci K, Touet M, Shaib AH, Chihab A, Wani GA, Nieper P, Hartmann GG et al..  2025.  Functional synapses between neurons and small cell lung cancer.. Nature.
Banerjee A, Chatterjee M, Tan KJunn, Tay S, Duan K, Andiappan AKumar, Howland SWu, Aso Y, Aw SShiying.  2025.  GABAergic neuronal dysfunction underlies tremor in a Drosophila model of Spinocerebellar ataxia 3. Dis Model Mech.
Koshenov Z, Kokotos AC, Benedetti L, Schwartz JLippincott, Ryan TA.  2025.  A genetic driver of epileptic encephalopathy impairs gating of synaptic glycolysis. bioRxiv.
Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie ME, MacLennan BJ, Hagihara KM et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. Nat Methods.