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2025
Charvat AF, Mason-Chalmers K, Grabinska-Rogala A, Shivakumar S, Gale-Day Z, Wu T, Millbern Z, Grimm J, Carroll EC, Nilsson P et al..  2025.  Aurora 2.0: A Fluorogenic Dye Library for Expanding the Capability of Protein-Adaptive Differential Scanning Fluorimetry (paDSF).. SLAS Discov. :100259.
Hillsley A, Stein J, Tillberg PW, Stern DL, Funke J.  2025.  A Bayesian Model to Count the Number of Two-State Emitters in a Diffraction Limited Spot.. Nano Lett.
Antunes MMota, Oliveira AGustavo, de Paula CMaria, Chew T-L, Paula-Neto HA, Menezes GB.  2025.  Bioimaging Brasil: democratizing in vivo optical microscopy to drive scientific progress across a vast nation.. Nat Methods.
Desissaire S, Ziemczonok M, Cantat-Moltrecht T, Kuś A, Godefroy G, Hervé L, Paviolo C, Krauze W, Allier C, Mandula O et al..  2025.  Bio-inspired 3D-printed phantom: Encoding cellular heterogeneity for characterization of quantitative phase imaging. Measurement. 247:116765.
Galbraith CG, English BP, Boehm U, Galbraith J.  2025.  BPS2025 - Local cytoplasmic tradewinds direct soluble proteins to their targets. Biophysical Journal. 124(3):375a-376a.
Wang ZAiden, Chen S, Liu Y, Liu D, Svoboda K, Li N, Druckmann S.  2025.  Brain-wide analysis reveals movement encoding structured across and within brain areas. Nat Neurosci.
Jacob LPL, Bailes SM, Williams SD, Stringer C, Lewis LD.  2025.  Brainwide hemodynamics predict EEG neural rhythms across sleep and wakefulness in humans.. PLoS Comput Biol. 21(9):e1013497.
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Shitara A, Nagase H, Bleck CKE, Ohno Y, Kataoka H, Satoh K, Kashimata M.  2025.  Cdc42 regulates apical membrane fusion via the Rab11a–VAMP2 pathway in salivary gland acinar cells. bioRxiv.
Chiu H, Robie AA, Branson K, Vippa T, Epstein S, Rubin GM, Anderson DJ, Schretter CE.  2025.  Cell type-specific contributions to a persistent aggressive internal state in female Drosophila. Elife. 12
Wolff T, Eddison M, Chen N, Nern A, Sundaramurthi P, Sitaraman D, Rubin GM.  2025.  Cell type-specific driver lines targeting the Drosophila central complex and their use to investigate neuropeptide expression and sleep regulation. elife.
Stringer C, Pachitariu M.  2025.  Cellpose3: one-click image restoration for improved cellular segmentation.. Nat Methods.
Pachitariu M, Rariden M, Stringer C.  2025.  Cellpose-SAM: superhuman generalization for cellular segmentation. bioRxiv.
Gupta H, Haase J, Wu Y, Chen J, Karadimov G, Shroff H, Kelly AE.  2025.  The CENP-A chaperone complex spatially organizes centromeres. bioRxiv.
Aaron JS, Jacobs CA, Malacrida L, Keppler A, French P, Fletcher DA, Wood C, Brown CM, Wright GD, Ogawa S et al..  2025.  Challenges of microscopy technology dissemination to resource-constrained communities.. Nat Methods.
Hu G, Savini M, Cooke MBrandon, Wei X, Deng D, Gao SM, Xia RAlps, Guan Y, Wen AX, Yu X et al..  2025.  Chemical modulation of gut bacterial metabolism induces colanic acid and extends the lifespan of nematode and mammalian hosts.. PLoS Biol. 23(11):e3002749.
Fukaya Y, Yoshikawa M, Aoki K, Farrants H, Johnsson K, Tsukiji S.  2025.  A chemically switchable synthetic condensate platform for reversible protein sequestration and release. ACS Chem Biol.
Faini G, Tuffery M, Saleem A, Zhang L, Du F, Le Bourdelles G, Duroure K, Schreiter ER, Tanese D, Emiliani V et al..  2025.  CHLOK: a chemigenetic multicolor labeling system to visualize neuronal birthdate and circuit integration. Research Square.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: a differentiable, GPU-accelerated wave-optics library. bioRxiv.
Glendening AM, Stephens C, Vuruputoor VS, Chaganti T, Myles MN, Stern DL, Abdelalim M, Juang Y-P, Hogenhout SA, Mathers TC et al..  2025.  Chromosome scale genomes of two invasive Adelges species enable virtual screening for selective adelgicides.. G3 (Bethesda). 16(1)
Bulanchuk P, Koay SAnn, Romani S.  2025.  A Class of Markovian Self-Reinforcing Processes with Power-Law Distributions. arXiv.
Csillag V, Forastieri C, Szücs GMartina, Vidal ITalaya, Bizzozzero MHiriart, Lavis LD, Calvigioni D, Fuzik J.  2025.  Collateral connectomes of Esr1-positive hypothalamic neurons modulate defensive behavior plasticity. bioRxiv.
Park SYun, Sheridan A, An B, Jarvis E, Lyudchik J, Patton W, Axup JY, Chan SW, Damstra HGJ, Leible D et al..  2025.  Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context. bioRxiv.
Pjanovic V, Zavatone-Veth JA, Masset P, Keemink SW, Nardin M.  2025.  Combining Sampling Methods with Attractor Dynamics in Spiking Models of Head-Direction Systems. bioRxiv.
Pentimalli TMassimo, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L et al..  2025.  Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.. Cell Syst. :101261.