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2026
Choi H, Liao Y-C, Yoon YJ, Grimm J, Wang N, Lavis LD, Singer RH, Lippincott-Schwartz J.  2026.  Secretome translation shaped by lysosomes and lunapark-marked ER junctions.. Nature. (649):227–236.
Weigel A.  2026.  Seeing lipids where they live. Nat Cell Biol.
Zhang Y, Ouadah Y, Liu Y, Kumar M, Morck M, Krasnow MA.  2026.  Stem cell control and cancer initiation by an autocrine, injury-activated Igf complex. bioRxiv.
Esakova OA, Jung J, Lee H, Cho SHyun, Alumasa J, Schwalm EL, Grove TL, Bauerle MR, Hafenstein SL, Yu Z et al..  2026.  Structural Basis for C8 methylation of 23S ribosomal RNA by Cfr. bioRxiv.
Herrera KJ, Zarghani-Shiraz A, Ahrens MB, Engert F, Fishman MC.  2026.  Synchronization of behavioral and cardiac dynamics in larval zebrafish.. Cell Rep. 45(2):116947.
Muralidharan S, Leng C, Orts L, Trepka E, Zhu S, Panichello M, Jonikaitis D, Pennington J, Pachitariu M, Moore T.  2026.  A System for live sorting of neuronal spiking activity from large-scale recordings. bioRxiv.
Abidi AA, Cattoglio C, Tang NN, Fan VB, Dailey GM, Hay AD, Kunamaneni P, Milkie DE, Darzacq X, Betzig E et al..  2026.  Unstructured transcription factor interactions enable emergent specificity.. Science. :eaeb6487.
Legorreta EMarquez, Fleishman GM, Hesselink LW, Eddison M, Smeets K, Stringer C, Keller PJ, Narayan S, Chen AB, Mensh BD et al..  2026.  Whole-brain co-mapping of gene expression and neuronal activity at cellular resolution in behaving zebrafish. bioRxiv.
2025
Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al..  2025.  Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.
Squires JR, Sun Y, Hoffmann AD, Zhang Y, Minor AC, Singh A, Scholten D, Ding H, Mao C, Platanias LC et al..  2025.  Abstract B049: Deep learning enables identification of cell types and clusters (iCTC) in immune tumor ecosystems for prognostic assessment in cancer. Clinical Cancer Research. 31:B049-B049.
Januszewski M, Templier T, Hayworth KJeffrey, Peale D, Hess H.  2025.  Accelerating neuron reconstruction with PATHFINDER. bioRxiv.
Yu Z, Gutu A, Kim N, O’Shea EK.  2025.  Activity-dependent synapse elimination requires caspase-3 activation. eLife.
Schretter CE.  2025.  Aggression across sexes from a contextual- and circuit-based perspective.. Curr Opin Neurobiol. 93:103071.
Shtengel G, Qiu W, Aaron J, Crowe AS, Polilov AA, Karkali K, Bleck CKE, Hess HH.  2025.  Alternating angle milling suppresses streaking artifacts in FIB-SEM imaging. bioRxiv.
Liu H, Squires J, Sun Y, Hoffmann ADaniel, Zhang Y, Platanias LC, Gradishar WJohn, Cristofanilli M, Stringer C.  2025.  Analysis of deep learning for automated recognition of immune cells interacting with CTCs for prognostic assessment in cancer.. Journal of Clinical Oncology. 43:e13028-e13028.
Charvat AF, Mason-Chalmers K, Grabinska-Rogala A, Shivakumar S, Gale-Day Z, Wu T, Millbern Z, Grimm J, Carroll EC, Nilsson P et al..  2025.  Aurora 2.0: A fluorogenic dye library for expanding the capability of protein-adaptive Differential Scanning Fluorimetry (paDSF).. SLAS Discov. :100259.
Hillsley A, Stein J, Tillberg PW, Stern DL, Funke J.  2025.  A Bayesian model to count the number of two-state emitters in a diffraction limited spot.. Nano Lett.
Antunes MMota, Oliveira AGustavo, de Paula CMaria, Chew T-L, Paula-Neto HA, Menezes GB.  2025.  Bioimaging Brasil: democratizing in vivo optical microscopy to drive scientific progress across a vast nation.. Nat Methods.
Desissaire S, Ziemczonok M, Cantat-Moltrecht T, Kuś A, Godefroy G, Hervé L, Paviolo C, Krauze W, Allier C, Mandula O et al..  2025.  Bio-inspired 3D-printed phantom: Encoding cellular heterogeneity for characterization of quantitative phase imaging. Measurement. 247:116765.
Galbraith CG, English BP, Boehm U, Galbraith J.  2025.  BPS2025 - Local cytoplasmic tradewinds direct soluble proteins to their targets. Biophysical Journal. 124(3):375a-376a.
Wang ZAiden, Chen S, Liu Y, Liu D, Svoboda K, Li N, Druckmann S.  2025.  Brain-wide analysis reveals movement encoding structured across and within brain areas. Nat Neurosci.
Jacob LPL, Bailes SM, Williams SD, Stringer C, Lewis LD.  2025.  Brainwide hemodynamics predict EEG neural rhythms across sleep and wakefulness in humans.. PLoS Comput Biol. 21(9):e1013497.
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Shitara A, Nagase H, Bleck CKE, Ohno Y, Kataoka H, Satoh K, Kashimata M.  2025.  Cdc42 regulates apical membrane fusion via the Rab11a–VAMP2 pathway in salivary gland acinar cells. bioRxiv.
Chiu H, Robie AA, Branson K, Vippa T, Epstein S, Rubin GM, Anderson DJ, Schretter CE.  2025.  Cell type-specific contributions to a persistent aggressive internal state in female Drosophila. Elife. 12