Biblio

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2025
Guan Y, Yu Y, Gao SMax, Ding L, Zhao Q, Wang M.  2025.  Cross-Tissue Coordination between SLC Nucleoside Transporters Regulates Reproduction in Caenorhabditis elegans. PLoS Genet.
Uryu K, Zhao X, Shiozaki M, Yu Z.  2025.  Cryo-electron Microscopy of Vitreous Sections (CEMOVIS) application for model organisms. Microscopy and Microanalysis. 31(1(Supp)):ozaf048.484.
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.  2025.  Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol. 35(1):163-176.e4.
Guo M, Wu Y, Hobson CM, Su Y, Qian S, Krueger E, Christensen R, Kroeschell G, Bui J, Chaw M et al..  2025.  Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopyAbstract. Nature Communications. 16(1)
Schneider MC, Johnson C, Allier C, Heinrich L, Adjavon D, Husic J, La Riviere P, Saalfeld S, Shroff H.  2025.  DeepPD: Joint phase and object estimation from phase diversity with neural calibration of a deformable mirror. arXiv.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2025.  Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.
Mohar B, Michel G, Wang Y-Z, Hernandez V, Grimm JB, Park J-Y, Patel R, Clarke M, Brown TA, Bergmann C et al..  2025.  DELTA: A method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning.. Nat Neurosci.
Park P, Wong-Campos D, Itkis DG, Lee BHun, Qi Y, Davis H, Antin B, Pasarkar A, Grimm JB, Plutkis SE et al..  2025.  Dendritic excitations govern back-propagation via a spike-rate accelerometer. Nature Communications. 16(1)
Wang X, Arpino G, Mohseni A, Bleck CKE, Wu L-G.  2025.  Dense-core vesicles contain exosomes in secretory cells.. Biophys J.
Aaron J, Chew T-L.  2025.  De-risking transformative microscopy technologies for broad adoption.. J Microsc.
Espinosa-Medina I.  2025.  Design and Generation of TEMPO Reagents for Sequential Labeling and Manipulation of Vertebrate Cell Lineages.. Methods Mol Biol. 2886:327-353.
Tran L, Sharma S, Klein S, Jurgens D, Decarreau J, Liu B, Wang Y, Bera AK, Kang A, Woods J et al..  2025.  Design of Orthogonal Far-Red, Orange and Green Fluorophore-binding Proteins for Multiplex Imaging. bioRxiv.
Ott CM, Lippincott-Schwartz J.  2025.  Design principles of ciliary signaling.. J Cell Sci. 138(20)
Castro P.S, Tomasev N., Anand A., Sharma N., Mohanta R., Perlin K., Jain S., Levin K., Éltető N., Dabney W. et al..  2025.  Discovering symbolic cognitive models from human and animal behavior.. bioRxiv.
Patel A, Gonzalez V, Menon T, Shvartsman SY, Burdine R, Avdeeva M.  2025.  Disrupted developmental signaling induces novel transcriptional states. Proc Natl Acad Sci U S A.
Bates AShakeel, Phelps JS, Kim M, Yang HH, Matsliah A, Ajabi Z, Perlman E, Delgado KM, Osman MAbdal Moni, Salmon CK et al..  2025.  Distributed control circuits across a brain-and-cord connectome. bioRxiv.
Dutta S, Matos MCamila Per, Heintz C, Mutlu ASena, Piper M, Mistry M, Sharma A, Morrow CS, Smith H, Howell P et al..  2025.  The efficacy of longevity interventions in Caenorhabditis elegans is determined by the early life activity of RNA splicing factors.. PLoS Biol. 23(11):e3003504.
Guo Y, Hermundstad AM.  2025.  Efficient planning and implementation of optimal foraging strategies under energetic constraints. PNAS Nexus.
Hernandez-Nunez L, Avrami J, Shi S, Markarian A, Ruetten VMS, Boulanger-Weill J, Zarghani-Shiraz A, Ahrens M, Engert F, Fishman MC.  2025.  Emergence of Functional Heart-Brain Circuits in a Vertebrate.. eLife.
Flierman NA, Koay SAnn, van Hoogstraten WS, Ruigrok TJH, Roelfsema P, Badura A, De Zeeuw CI.  2025.  Encoding of cerebellar dentate neuron activity during visual attention in rhesus macaques.. Elife. 13
Di Fratta G, Innerberger M, Praetorius D, Slastikov V.  2025.  Energy minimization for skyrmions on planar thin films. arXiv.
Guo Y, Hermundstad AM.  2025.  Environmental dynamics impact whether matching is optimal. PNAS Nexus. :pgaf392.
Kim D, Park P, Li X, J Wong-Campos D, Tian H, Moult EM, Grimm JB, Lavis LD, Cohen AE.  2025.  EPSILON: A method for pulse-chase labeling to probe synaptic AMPAR exocytosis during memory formation.. Nat Neurosci.
Joo JHyuck, Kasberg W, Douglas S, Udoh U, Carisey A, Messing J, Wang Y-D, Narina S, Pruett-Miller SM, Labelle M et al..  2025.  ER-to-Golgi trafficking is a nutrient-sensitive checkpoint linking glucose starvation to cell surface remodeling. bioRxiv.
Tadres D, Shiozaki HM, Tastekin I, Stern DL, Louis M.  2025.  An essential experimental control for functional connectivity mapping with optogenetics.. Genetics. 231(3)