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Peng Y, Gillis-Smith S, Jin H, Tränkner D, Ryba NJP, Zuker CS.  2015.  Sweet and bitter taste in the brain of awake behaving animals.. Nature. 527(7579):512-5.
Peng H, Long F, Zhao T, Myers E.  2011.  Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions.. Neuroinformatics. 9:103-5.
Peng H, Tang J, Xiao H, Bria A, Zhou J, Butler V, Zhou Z, Gonzalez-Bellido PT, Oh SW, Chen J et al..  2014.  Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis.. Nature Communications. 5:4342.
Peng X, Clements J, Jiang Z, Preibisch S, Li J.  2023.  PEELing: an integrated and user-centric platform for cell-surface proteomics analysis. bioRxiv.
Peng H, Hawrylycz M, Roskams J, Hill S, Spruston N, Meijering E, Ascoli GA.  2015.  BigNeuron: Large-scale 3D neuron reconstruction from optical microscopy images.. Neuron. 87:252-6.
Peng H, Long F, Zhou J, Leung G, Eisen MB, Myers EW.  2007.  Automatic image analysis for gene expression patterns of fly embryos.. BMC Cell Biology. 8(Supplement 1):S7.
Peng H, Long F, Ding C.  2005.  Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.. IEEE Transactions on Pattern Analysis and Machine Intelligence. 27(8):1226-38.
Peng H, Long F, Liu X, Kim SK, Myers EW.  2008.  Straightening caenorhabditis elegans images.. Bioinformatics. 24:234-42.
Peng H, Long F, Myers EW.  2007.  Straightening worm images.. 2007 4TH IEEE International Symposium on Biomedical Imagin : Macro to Nano, VOLS 1-3. :292-5.
Peng H.  2008.  Bioimage informatics: a new area of engineering biology.. Bioinformatics. 24(17):1827-36.
Peng H, Ruan Z, Long F, Simpson JH, Myers EW.  2010.  VAA3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets.. Nature Biotechnology. 28:348-53.
Peng H, Long F, Myers EW.  2009.  VANO: a volume-object image annotation system.. Bioinformatics. 25:695-7.
Peng H, Bateman A, Valencia A, Wren JD.  2012.  Bioimage informatics: a new category in Bioinformatics.. Bioinformatics. 28(8):1057.
Pereanu W, Kumar A, Jennett A, Reichert H, Hartenstein V.  2010.  Development-based compartmentalization of the Drosophila central brain.. J Comp Neurol. 518(15):2996-3023.
Pereanu W, Younossi-Hartenstein A, Lovick J, Spindler S, Hartenstein V.  2011.  Lineage-based analysis of the development of the central complex of the Drosophila brain.. J Comp Neurol. 519(4):661-89.
Perez-Alvarez A, Fearey BC, Schulze C, O'Toole RJ, Moeyaert B, Mohr MAlexander, Arganda-Carreras I, Yang W, J Wiegert S, Schreiter ER et al..  2020.  Freeze-frame imaging of synaptic activity using SynTagMA.. Nature Communications. 11(1):2464.
Perez-Leal O, Nixon-Abell J, Barrero CA, Gordon J, Rico MC.  2020.  A versatile vector system for the fast generation of knock-in cell lines with CRISPR.. bioRxiv.
Perez-Leal O, Nixon-Abell J, Barrero CA, Gordon JC, Oesterling J, Rico MC.  2021.  Multiplex Gene Tagging with CRISPR-Cas9 for Live-Cell Microscopy and Application to Study the Role of SARS-CoV-2 Proteins in Autophagy, Mitochondrial Dynamics, and Cell Growth.. The CRISPR Journal.
Perez-Orive J, Mazor O, Turner GC, Cassenaer S, Wilson RI, Laurent G.  2002.  Oscillations and sparsening of odor representations in the mushroom body.. Science (New York, N.Y.). 297(5580):359-65.
Perkins LA, Holderbaum L, Tao R, Hu Y, Sopko R, McCall K, Yang-Zhou D, Flockhart I, Binari R, Shim H-S et al..  2015.  The transgenic RNAi project at Harvard Medical School: resources and validation.. Genetics. 201(3):843-52.
Peron SP.  2013.  Biophysical mechanisms of computation in a looming sensitive neuron.. The Computing Dendrite. 11:277-293.
Peron SP, Freeman J, Iyer V, Guo C, Svoboda K.  2015.  A cellular resolution map of barrel cortex activity during tactile behavior.. Neuron. 86(3):783-99.
Peron S, Svoboda K.  2011.  From cudgel to scalpel: toward precise neural control with optogenetics.. Nature Methods. 8(1):30-4.
Peron S, Chen T-W, Svoboda K.  2015.  Comprehensive imaging of cortical networks.. Current Opinion in Neurobiology. 32:115-123.
Peron S, Pancholi R, Voelcker B, Wittenbach JD, H Ólafsdóttir F, Freeman J, Svoboda K.  2020.  Recurrent interactions in local cortical circuits.. Nature. 579(7798):256-59.