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Author Title [ Type(Desc)] Year
Journal Article
Plaza SM, Markov IL.  2015.  Solving the third-shift problem in ic piracy with test-aware logic locking.. IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 34(6):961-71.
Sawtelle S, Narayan L, Ding Y, Kim E, Behrman EL, Lillvis JL, Kawase T, Stern DL.  2024.  Song Torrent: A modular, open-source 96-chamber audio and video recording apparatus with optogenetic activation and inactivation capabilities for Drosophila. bioRxiv.
Arthur BJ, Ding Y, Sosale M, Khalif F, Kim E, Waddell P, Turaga SC, Stern DL.  2021.  SongExplorer: A deep learning workflow for discovery and segmentation of animal acoustic communication signals. bioRxiv.
Yao PJ, Manor U, Petralia RS, Brose RD, T Y Wu R, Ott C, Wang Y-X, Charnoff A, Lippincott-Schwartz J, Mattson MP.  2016.  Sonic Hedgehog Pathway activation increases mitochondrial abundance and activity in hippocampal neurons.. Molecular Biology of the Cell.
Kim JS, Greene MJ, Zlateski A, Lee K, Richardson M, Turaga SC, Purcaro M, Balkam M, Robinson A, Behabadi BF et al..  2014.  Space-time wiring specificity supports direction selectivity in the retina.. Nature. 509(7500):331-6.
Baker NE, Mlodzik M, Rubin GM.  1990.  Spacing differentiation in the developing Drosophila eye: a fibrinogen-related lateral inhibitor encoded by scabrous.. Science. 250(4986):1370-7.
Betzig E.  2005.  Sparse and composite coherent lattices. (With commentary). Physical Review A. 71:063406.
Lin AC, Bygrave AM, de Calignon A, Lee T, Miesenböck G.  2014.  Sparse, decorrelated odor coding in the mushroom body enhances learned odor discrimination.. Nature Neuroscience. 17(4):559-68.
Koulakov AA, Rinberg D.  2011.  Sparse incomplete representations: a potential role of olfactory granule cells.. Neuron. 72(1):124-36.
Rinberg D, Koulakov A, Gelperin A.  2006.  Sparse odor coding in awake behaving mice.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 26(34):8857-65.
Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, Svoboda K.  2008.  Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice.. Nature. 451(7174):61-4.
Erwin SR, Sun W, Copeland M, Lindo S, Spruston N, Cembrowski MS.  2020.  A Sparse, Spatially Biased Subtype of Mature Granule Cell Dominates Recruitment in Hippocampal-Associated Behaviors.. Cell Reports. 31(4):107551.
Chang C-L, Weigel AV, Ioannou MS, H Pasolli A, C Xu S, Peale DR, Shtengel G, Freeman M, Hess HF, Blackstone C et al..  2019.  Spastin tethers lipid droplets to peroxisomes and directs fatty acid trafficking through ESCRT-III.. Journal of Cell Biology. 218(8):2583-99.
Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH et al..  2012.  Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control.. Genes & Development. 26(1):43-53.
Cembrowski MS, Bachman JL, Wang L, Sugino K, Shields BC, Spruston N.  2016.  Spatial gene-expression gradients underlie prominent heterogeneity of CA1 pyramidal neurons.. Neuron.
Parlakgül G, Pang S, Artico LL, Min N, Cagampan E, Villa R, Goncalves RLS, Lee GYankun, C Xu S, Hotamışlıgil GS et al..  2024.  Spatial mapping of hepatic ER and mitochondria architecture reveals zonated remodeling in fasting and obesity. Nat Commun. 15(1):3982.
Egnor SERoian.  2017.  Spatial Memory: Mice Quickly Learn a Safe Haven.. Current Biology : CB. 27(10):R388-R390.
Dong P, Zhang S, Xie L, Wang L, Lemire AL, Lander AD, Chang HY, Liu ZJ.  2022.  Spatial organization of the 3D genome encodes gene co-expression programs in single cells. bioRxiv.
Morimoto MM, Nern A, Zhao A, Rogers EM, Wong A, Isaacson MD, Bock D, Rubin GM, Reiser MB.  2020.  Spatial readout of visual looming in the central brain of Drosophila.. eLife. 9
Qian X, Coleman K, Jiang S, Kriz AJ, Marciano JH, Luo C, Cai C, Manam MDevi, Caglayan E, Otani A et al..  2024.  Spatial Single-cell Analysis Decodes Cortical Layer and Area Specification. bioRxiv.
Erwin SR, Bristow BN, Sullivan KE, Kendrick RM, Marriott B, Wang L, Clements J, Lemire AL, Jackson J, Cembrowski MS.  2021.  Spatially patterned excitatory neuron subtypes and projections of the claustrum.. eLife. 10
Hung V, Udeshi ND, Lam SS, Loh KH, Cox KJ, Pedram K, Carr SA, Ting AY.  2016.  Spatially resolved proteomic mapping in living cells with the engineered peroxidase APEX2. Nature Protocols. 11(3):456-475.
Li N, Chen S, Guo ZV, Chen H, Huo Y, Inagaki HK, Chen G, Davis C, Hansel D, Guo C et al..  2019.  Spatiotemporal constraints on optogenetic inactivation in cortical circuits.. eLife. 8
Nguyen VQ, Ranjan A, Liu S, Tang X, Ling YHin, Wisniewski J, Mizuguchi G, Li KYu, Jou V, Zheng Q et al..  2021.  Spatiotemporal coordination of transcription preinitiation complex assembly in live cells.. Molecular Cell. 81(17):3560-3575.
Downie AE, Oyesola O, Barre RS, Caudron Q, Chen Y-H, Dennis EJ, Garnier R, Kiwanuka K, Menezes A, Navarrete DJ et al..  2023.  Spatiotemporal-social association predicts immunological similarity in rewilded mice.. Science Advances. 9(51):eadh8310.