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Hocine S, Singer RH.  2011.  A date with telomerase: pick you up at S phase.. Molecular Cell. 44(5):685-6.
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.  2024.  Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol.
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.  2025.  Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol. 35(1):163-176.e4.
Boyken SE, Benhaim MA, Busch F, Jia M, Back MJ, Choi H, Klima JC, Chen Z, Walkey C, Mileant A et al..  2019.  De novo design of tunable, pH-driven conformational changes.. Science. 364(6441):658-64.
Chen Y, Yserentant K, Hong K, Kuang Y, Bhowmick A, Charles-Orszag A, Lord SJ, Lu L, Hou K, Mann SI et al..  2025.  De novo designed bright, hyperstable rhodamine binders for fluorescence microscopy. bioRxiv.
Willy NM, Ferguson JP, Akatay A, Huber S, Djakbarova U, Silahli S, Cakez C, Hasan F, Chang HC, Travesset A et al..  2021.  De novo endocytic clathrin coats develop curvature at early stages of their formation.. Development Cell. 56(22):3146-3159.e5.
Chen Z, Shiozaki M, Haas KM, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD et al..  2023.  De novo protein identification in mammalian sperm using high-resolution in situ cryo-electron tomography. Cell. 186(23):5041-5053.e19.
Huang R, Xu Y, Wan W, Shou X, Qian J, You Z, Liu B, Chang C, Zhou T, Lippincott-Schwartz J et al..  2015.  Deacetylation of nuclear LC3 drives autophagy initiation under starvation.. Molecular cell. 57(3):456-66.
Avidor-Reiss T, Maer AM, Koundakjian E, Polyanovsky A, Keil T, Subramaniam S, Zuker CS.  2004.  Decoding cilia function: defining specialized genes required for compartmentalized cilia biogenesis.. Cell. 117(4):527-39.
Henriques R, Leterrier C, Weigel A.  2023.  Decoding life's inner workings: advances in quantitative bioimaging.. Open Biology. 13(11):230329.
Allier C, Schneider MC, Innerberger M, Heinrich L, Bogovic JA, Saalfeld S.  2024.  Decomposing heterogeneous dynamical systems with graph neural networks. arXiv.
Shields BC, Kahuno E, Kim C, Apostolides PF, Brown J, Lindo S, Mensh BD, Dudman JT, Lavis LD, Tadross MR.  2017.  Deconstructing behavioral neuropharmacology with cellular specificity.. Science (New York, N.Y.). 356(6333)
Atasoy D, J Betley N, Su HH, Sternson SM.  2012.  Deconstruction of a neural circuit for hunger.. Nature. 488(7410):172-7.
Ellis EE, Adkins CT, Galovska NM, Lavis LD, R Johnson J.  2013.  Decoupled roles for the atypical, bifurcated binding pocket of the ybfF hydrolase.. Chembiochem : A European Journal of Chemical Biology. 14(9):1134-44.
Leonardo A, Konishi M.  1999.  Decrystallization of adult birdsong by perturbation of auditory feedback.. Nature. 399(6735):466-70.
Humberg T-H, Bruegger P, Afonso B, Zlatic M, Truman JW, Gershow M, Samuel A, Sprecher SG.  2018.  Dedicated photoreceptor pathways in Drosophila larvae mediate navigation by processing either spatial or temporal cues.. Nature Communications. 9(1):1260.
Branson K.  2018.  A deep (learning) dive into a cell.. Nature Methods. 15(4):253-4.
Speiser A, Müller L-R, Matti U, Obara CJ, Legant WR, Kreshuk A, Macke JH, Ries J, Turaga SC.  2021.  Deep learning enables fast and dense single-molecule localization with high accuracy. Nature Methods. 18(9)
Heinrich L, Bogovic JA, Saalfeld S.  2017.  Deep learning for isotropic super-resolution from non-isotropic 3D electron microscopy.. International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2017. MICCAI 2017. Lecture Notes in Computer Science. 10434:arXiv:1706.03142.
Guo M, Wu Y, Hobson CM, Su Y, Qian S, Krueger E, Christensen R, Kroeschell G, Bui J, Chaw M et al..  2025.  Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopyAbstract. Nature Communications. 16(1)
Schneider MC, Johnson C, Allier C, Heinrich L, Adjavon D, Husic J, La Riviere P, Saalfeld S, Shroff H.  2025.  DeepPD: Joint Phase and Object Estimation from Phase Diversity with Neural Calibration of a Deformable Mirror. arXiv.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2025.  Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.
Kunduri G, Turner-Evans D, Konya Y, Izumi Y, Nagashima K, Lockett S, Holthuis J, Bamba T, Acharya U, Acharya JK.  2018.  Defective cortex glia plasma membrane structure underlies light-induced epilepsy in mutants.. Proceedings of the National Academy of Sciences of the United States of America. 115(38):E8919-28.
Allison R, Edgar JR, Pearson G, Rizo T, Newton T, Günther S, Berner F, Hague J, Connell JW, Winkler J et al..  2017.  Defects in ER-endosome contacts impact lysosome function in hereditary spastic paraplegia.. The Journal of Cell Biology. 216(5):1337-55.
Li J, Zhang W, Guo Z, Wu S, Jan LYeh, Jan Y-N.  2016.  A Defensive Kicking Behavior in Response to Mechanical Stimuli Mediated by Drosophila Wing Margin Bristles.. J Neurosci. 36(44):11275-11282.