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Author Title [ Type(Desc)] Year
Journal Article
Kokel D, Dunn TW, Ahrens MB, Alshut R, Cheung CYan J, Saint-Amant L, Bruni G, Mateus R, van Ham TJ, Shiraki T et al..  2013.  Identification of nonvisual photomotor response cells in the vertebrate hindbrain.. The Journal of Neuroscience. 33(9):3834-43.
Yoo J, Dombrovski M, Mirshahidi P, Nern A, LoCascio SA, S. Zipursky L, Kurmangaliyev YZ.  2023.  Identifying determinants of synaptic specificity by integrating connectomes and transcriptomes. bioRxiv.
Munshi S, Neupane K, Ileperuma SM, Halma MTJ, Kelly JA, Halpern CF, Dinman JD, Loerch S, Woodside MT.  2022.  Identifying Inhibitors of -1 Programmed Ribosomal Frameshifting in a Broad Spectrum of Coronaviruses.. Viruses. 14(2)
Masson J-B, Laurent F, Cardona A, Barre C, Skatchkovsky N, Zlatic M, Jovanic T.  2020.  Identifying neural substrates of competitive interactions and sequence transitions during mechanosensory responses in Drosophila.. PLoS Genetics. 16(2):e1008589.
Cardona A, Saalfeld S, Arganda I, Pereanu W, Schindelin J, Hartenstein V..  2010.  Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts.. The Journal of Neuroscience. 30(22):7538-53.
Huang G, Plaza SM.  2014.  Identifying synapses using deep and wide multiscale recursive networks.. arXiv. :arXiv:1409.1789[cs.CV].
Lebovich L, Darshan R, Lavi Y, Hansel D, Loewenstein Y.  2019.  Idiosyncratic choice bias in decision tasks naturally emerges from neuronal network dynamics.. Nature Human Behavior. 3(11):1190-1202.
Smith MA-Y, Honegger KS, Turner G, de Bivort B.  2022.  Idiosyncratic learning performance in flies.. Biology Letters. 18(2):20210424.
Smith M, Honegger KS, Turner G, de Bivort B.  2021.  Idiosyncratic learning performance in flies generalizes across modalities.. bioRxiv.
Honegger KS, Smith MA-Y, Churgin MA, Turner GC, de Bivort BL.  2020.  Idiosyncratic neural coding and neuromodulation of olfactory individuality in Drosophila.. Proceedings of the National Academy of Sciences of the United States of America. 117(38):23292-23297.
Tan L, Zhang KXi, Pecot MY, Nagarkar-Jaiswal S, Lee P-T, Takemura S-ya, McEwen JM, Nern A, Xu S, Tadros W et al..  2015.  Ig superfamily ligand and receptor pairs expressed in synaptic partners in Drosophila.. Cell. 163(7):1756-69.
Stöhr N, Köhn M, Lederer M, Glass M, Reinke C, Singer RH, Hüttelmaier S.  2012.  IGF2BP1 promotes cell migration by regulating MK5 and PTEN signaling.. Genes & Development. 26(2):176-89.
Sanada S, Hakuno D, Higgins LJ, Schreiter ER, McKenzie ANJ, Lee RT.  2007.  IL-33 and ST2 comprise a critical biomechanically induced and cardioprotective signaling system.. The Journal of Clinical Investigation. 117(6):1538-49.
Berg S, Kutra D, Kroeger T, Straehle CN, Kausler BX, Haubold C, Schiegg M, Ales J, Beier T, Rudy M et al..  2019.  ilastik: interactive machine learning for (bio)image analysis.. Nature Methods. 16:1226-32.
Cembrowski MS, Spruston N.  2016.  Illuminating the neuronal architecture underlying context in fear memory.. Cell. 167(4):888-9.
Spors H, Albeanu DFlorin, Murthy VN, Rinberg D, Uchida N, Wachowiak M, Friedrich RW.  2012.  Illuminating vertebrate olfactory processing.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 32(41):14102-8.
Aaron JS, Taylor AB, Chew T-L.  2018.  Image co-localization - co-occurrence versus correlation.. Journal of Cell Science. 131(3)
Xie J, Heng P-A, Ho SSM, Shah M.  2006.  Image diffusion using saliency bilateral filter.. Medical Image Computing and Computer-Assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 9:67-75.
Ruan X, Mueller M, Liu G, Görlitz F, Fu T-M, Milkie DE, Lillvis J, Killilea A, Betzig E, Upadhyayula S.  2024.  Image processing tools for petabyte-scale light sheet microscopy data.. bioRxiv.
Hanslovsky P, Bogovic JA, Saalfeld S.  2016.  Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy.. Bioinformatics (Oxford, England).
Kanfer G, Sarraf SA, Maman Y, Baldwin H, Dominguez-Martin E, Johnson KR, Ward ME, Kampmann M, Lippincott-Schwartz J, Youle RJ.  2021.  Image-based pooled whole-genome CRISPRi screening for subcellular phenotypes.. Journal of Cell Biology. 220(2)
Preibisch S, Karaiskos N, Rajewsky N.  2021.  Image-based representation of massive spatial transcriptomics datasets.. bioRxiv.
Campbell RAA, Honegger KS, Qin H, Li W, Demir E, Turner GC.  2013.  Imaging a population code for odor identity in the Drosophila mushroom body.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 33(25):10568-81.
Reiche MA, Warner DF, Aaron J, Khuon S, Fletcher DA, Hahn K, Rogers KL, Mhlanga M, Koch A, Quaye W et al..  2021.  Imaging Africa: a strategic approach to optical microscopy training in Africa.. Nature Methods. 18(8):847-855.
Hayworth KJ, Morgan JL, Schalek R, Berger DR, Hildebrand DGC, Lichtman JW.  2014.  Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits.. Frontiers in Neural Circuits. 8:68.