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Tang X, Li T, Liu S, Wisniewski J, Zheng Q, Rong Y, Lavis LD, Wu C.  2022.  Kinetic principles underlying pioneer function of GAGA transcription factor in live cells.. Nature Structural and Molecular Biology. 29(7):665-676.
Cheerambathur DK, Prevo B, Chow T-L, Hattersley N, Wang S, Zhao Z, Kim T, Gerson-Gurwitz A, Oegema K, Green R et al..  2019.  The Kinetochore-Microtubule Coupling Machinery Is Repurposed in Sensory Nervous System Morphogenesis. Developmental Cell. 48:864-872.e7.
Li J, Zaslavsky M, Su Y, Guo J, Sikora MJ, van Unen V, Christophersen A, Chiou S-H, Chen L, Li J et al..  2022.  KIRCD8 T cells suppress pathogenic T cells and are active in autoimmune diseases and COVID-19.. Science. 376(6590):eabi9591.
Van HT, Xie G, Dong P, Liu Z, Ge K.  2024.  KMT2 family of H3K4 methyltransferases: enzymatic activity-dependent and -independent functions.. Journal of Molecular Biology. :168453.
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH.  2009.  Knockdown of parhyale ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.. Proceedings of the National Academy of Sciences of the United States of America. 106:13892-6.
Yu JY, Pettibone JR, Guo C, Zhang S, Saunders TL, Hughes ED, Filipiak WE, Zeidler MG, Bender KJ, Hopf F et al..  2018.  Knock-in rats expressing Cre and Flp recombinases at the Parvalbumin locus.. bioRxiv.
Minakuchi C, Zhou X, Riddiford LM.  2008.  Krüppel homolog 1 (Kr-h1) mediates juvenile hormone action during metamorphosis of Drosophila melanogaster.. Mechanisms of Development. 125:91-105.
L
Samolis PD, Langley D, O'Reilly BM, Oo Z, Hilzenrat G, Erramilli S, Sgro AE, McArthur S, Sander MY.  2021.  Label-free imaging of fibroblast membrane interfaces and protein signatures with vibrational infrared photothermal and phase signals.. Biomed Opt Express. 12(1):303-319.
Liu B, Lee HJeong, Zhang D, Liao C-S, Ji N, Xia Y, Cheng J-X.  2015.  Label-free spectroscopic detection of membrane potential using stimulated Raman scattering.. Applied Physics Letters. 106:173704.
Mohr MAlexander, Argast P, Pantazis P.  2016.  Labeling cellular structures in vivo using confined primed conversion of photoconvertible fluorescent proteins.. Nature Protocols. 11(12):2419-2431.
Fosque BF, Sun Y, Dana H, Yang C-T, Ohyama T, Tadross MR, Patel R, Zlatic M, Kim DS, Ahrens MB et al..  2015.  Labeling of active neural circuits in vivo with designed calcium integrators.. Science. 347(6223):755-60.
Nasu Y, Aggarwal A, Le GNT, Vo CTrang, Kambe Y, Wang X, Beinlich FRM, Lee ABomin, Ram TR, Wang F et al..  2023.  Lactate biosensors for spectrally and spatially multiplexed fluorescence imaging.. Nature Communications. 14(1):6598.
Swinburne IA, Mosaliganti KR, Upadhyayula S, Liu T-L, Hildebrand DGC, Tsai TY-C, Chen A, Al-Obeidi E, Fass AK, Malhotra S et al..  2018.  Lamellar junctions in the endolymphatic sac act as a relief valve to regulate inner ear pressure.. eLife.
Swinburne IA, Mosaliganti KR, Upadhyayula S, Liu T-L, Hildebrand DGC, Tsai TY-C, Chen A, Al-Obeidi E, Fass AK, Malhotra S et al..  2018.  Lamellar projections in the endolymphatic sac act as a relief valve to regulate inner ear pressure.. eLife. 7
Hooks BM, S Hires A, Zhang Y-X, Huber D, Petreanu L, Svoboda K, Shepherd GMG.  2011.  Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas.. PLoS Biology. 9(1):e1000572.
P Rich D, Liaw H-P, Lee AK.  2014.  Large environments reveal the statistical structure governing hippocampal representations.. Science. 345(6198):814-7.
Sofroniew NJames, Flickinger D, King J, Svoboda K.  2016.  A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.. eLife. 5:e14472.
Micheva KD, Wolman D, Mensh BD, Pax E, Buchanan JA, Smith SJ, Bock DD.  2016.  A large fraction of neocortical myelin ensheathes axons of local inhibitory neurons.. eLife.
Li B, Bickel RD, Parker BJ, Ziabari OSaleh, Liu F, Vellichirammal NNanoth, Simon J-C, Stern DL, Brisson JA.  2020.  A large genomic insertion containing a duplicated follistatin gene is linked to the pea aphid male wing dimorphism.. eLife. 9
Funke J, Tschopp FD, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC.  2019.  Large scale image segmentation with structured loss based deep learning for connectome reconstruction.. IEEE Transactions on Pattern Analysis and Machine Intelligence. 41(7):1669-80.
Filippova EV, Weston LA, Kuhn ML, Geissler B, Gehring AM, Armoush N, Adkins CT, Minasov G, Dubrovska I, Shuvalova L et al..  2013.  Large scale structural rearrangement of a serine hydrolase from Francisella tularensis facilitates catalysis.. J Biol Chem. 288(15):10522-35.
Kleinfeld D, Bharioke A, Blinder P, Bock DD, Briggman KL, Chklovskii DB, Denk W, Helmstaedter M, Kaufhold JP, Lee W-CAllen et al..  2011.  Large-scale automated histology in the pursuit of connectomes.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 31(45):16125-38.
Ahrens MB, Huys QJM, Paninski L.  2006.  Large-scale biophysical parameter estimation in single neurons via constrained linear regression.. Neural Information Processing Systems. 18
Trautmann EM, Hesse JK, Stine GM, Xia R, Zhu S, O’Shea DJ, Karsh B, Colonell J, Lanfranchi FF, Vyas S et al..  2023.  Large-scale brain-wide neural recording in nonhuman primates. bioRxiv.
Plaza SM, Berg SE.  2016.  Large-scale electron microscopy image segmentation in spark.. arXiv. :arXiv:1604.00385.