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Daugird TA, Shi Y, Holland KL, Rostamian H, Liu Z, Lavis LD, Rodriguez J, Strahl BD, Legant WR.  2024.  Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment.. Nat. Commun..
Datta SRobert, Anderson DJ, Branson K, Perona P, Leifer A.  2019.  Computational neuroethology: A call to action.. Neuron. 104(1):11-24.
Das J, Miller ST, Stern DL.  2004.  Comparison of diverse protein sequences of the nuclear-encoded subunits of cytochrome C oxidase suggests conservation of structure underlies evolving functional sites.. Mol Biol Evol. 21(8):1572-82.
Das D, Murzin AG, Rawlings ND, Finn RD, Coggill P, Bateman A, Godzik A, Aravind L.  2014.  Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.. BMC Bioinformatics. 15:75.
Das S, Moon HC, Singer RH, Park HYoon.  2018.  A transgenic mouse for imaging activity-dependent dynamics of endogenous Arc mRNA in live neurons.. Science Advances. 4(6):eaar3448.
Das S, Vera M, Gandin V, Singer RH, Tutucci E.  2021.  Intracellular mRNA transport and localized translation.. Nature Reviews Molecular Cell Biology. 22(7):483-504.
Darzacq X, Yao J, Larson DR, Causse SZ, Bosanac L, de Turris V, Ruda VM, Lionnet T, Zenklusen D, Guglielmi B et al..  2009.  Imaging transcription in living cells.. Annual Review of Biophysics. 38:173-96.
Darshan R, van Vreeswijk C, Hansel D.  2018.  Strength of correlations in strongly recurrent neuronal networks.. Physical Review X. :031072.
Darshan R, Rivkind A.  2022.  Learning to represent continuous variables in heterogeneous neural networks. Cell Reports. 39(1):110612.
Darshan R, Leblois A, Hansel D.  2014.  Interference and shaping in sensorimotor adaptations with rewards.. PLoS Computational B2014-01-09iology. 10(1):e1003377.
Darshan R, Wood WE, Peters S, Leblois A, Hansel D.  2017.  A canonical neural mechanism for behavioral variability.. Nature Communications. 8:15415.
Dankert H, Wang L, Hoopfer ED, Anderson DJ, Perona P.  2009.  Automated monitoring and analysis of social behavior in Drosophila.. Nature Methods. 6(4):297-303.
Daniels BR, Rikhy R, Renz M, Dobrowsky TM, Lippincott-Schwartz J.  2012.  Multiscale diffusion in the mitotic Drosophila melanogaster syncytial blastoderm.. Proceedings of the National Academy of Sciences of the United States of America. 109(22):8588-93.
Dana H, Novak O, Guardado-Montesino M, Fransen JW, Hu A, Borghuis BG, Guo C, Kim DS, Svoboda K.  2018.  Thy1 transgenic mice expressing the red fluorescent calcium indicator jRGECO1a for neuronal population imaging in vivo.. PloS One. 13(10):e0205444.
Dana H, Sun Y, Mohar B, Hulse B, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R, Macklin JJ et al..  2018.  High-performance GFP-based calcium indicators for imaging activity in neuronal populations and microcompartments.. bioRxiv.
Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, Tsegaye G, Holt GT, Hu A, Walpita D et al..  2016.  Sensitive red protein calcium indicators for imaging neural activity.. eLife. 5
Dana H, Chen T-W, Hu A, Shields BC, Cui G, Looger L, Kim DS, Svoboda K.  2014.  Thy1 - GCaMP6 transgenic mice for neuronal population imaging in vivo.. PLoS One. 9(9):e108697.
Dana H, Sun Y, Mohar B, Hulse BK, Kerlin AM, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R et al..  2019.  High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.. Nature Methods. 16(7):649-57.
Dan C, Hulse BK, Kappagantula R, Jayaraman V, Hermundstad AM.  2024.  A neural circuit architecture for rapid learning in goal-directed navigation. Neruron.
Dan C, Hulse BK, Jayaraman V, Hermundstad AM.  2022.  Flexible control of behavioral variability mediated by an internal representation of head direction. bioRxiv.
Damstra HGJ, Mohar B, Eddison M, Akhmanova A, Kapitein LC, Tillberg PW.  2022.  Visualizing cellular and tissue ultrastructure using Ten-fold Robust Expansion Microscopy (TREx). eLife.
Damstra HGJ, Mohar B, Eddison M, Akhmanova A, Kapitein LC, Tillberg PW.  2023.  Ten-fold Robust Expansion Microscopy.. Bio-Protocol. 13(12):e4698.
Damon LJ, Aaron J, Palmer AE.  2022.  Single molecule microscopy to profile the effect of zinc status on transcription factor dynamics.. Scientific Reports. 12(1):17789.
Damon LJ, Aaron J, Palmer AE.  2022.  Single molecule microscopy to profile the effect of zinc status of transcription factor dynamics. bioRxiv.
Dalton JE, Fear JM, Knott S, Baker BS, McIntyre LM, Arbeitman MN.  2013.  Male-specific fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains.. BMC Genomics. 14:659.