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Shroff H, Testa I, Jug F, Manley S.  2024.  Live-cell imaging powered by computation.. Nature Reviews Molecular Cell Biology.
Shroff H, Galbraith CG, Galbraith JA, Betzig E.  2008.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.. Nature Methods. 5(5):417-23.
Shroff H, White H, Betzig E.  2008.  Photoactivated localization microscopy (PALM) of adhesion complexes. (With commentary). Current Protocols in Cell Biology. Chapter 4(Unit 4):21.
Shroff H, Galbraith CG, Galbraith JA, White H, Gillette J, Olenych S, Davidson MW, Betzig E.  2007.  Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes. (With commentary). Proceedings of the National Academy of Sciences of the United States of America. 104:20308-13.
D. Shon J, Malaker SA, Pedram K, Yang E, Krishnan V, Dorigo O, Bertozzi CR.  2020.  An enzymatic toolkit for selective proteolysis, detection, and visualization of mucin-domain glycoproteins. Proceedings of the National Academy of Sciences. 117(35):21299-21307.
Shohat-Ophir G., Kaun K.R., Azanchi R., Mohammed H, Heberlein U.  2012.  Sexual deprivation increases ethanol intake in Drosophila.. Science. 335(6074):1351-5.
Shohat-Ophir G., Kaun K.R., Azanchi R., Heberlein U.  2012.  Sexual experience affects ethanol intake in Drosophila through Neuropeptide F.. Science. 335(6074):1351-5.
Shivange AV, Borden PM, Muthusamy AK, Nichols AL, Bera K, Bao H, Bishara I, Jeon J, Mulcahy MJ, Cohen B et al..  2019.  Determining the pharmacokinetics of nicotinic drugs in the endoplasmic reticulum using biosensors.. The Journal of General Physiology.
Shivange AV, Borden PM, Muthusamy AK, Nichols AL, Bera K, Bao H, Bishara I, Jeon J, Mulcahy MJ, Cohen B et al..  2019.  Determining the pharmacokinetics of nicotinic drugs in the endoplasmic reticulum using biosensors.. The Journal of General Physiology. 151(6):738-57.
Shiu PK, Sterne GR, Engert S, Dickson BJ, Scott K.  2022.  Taste quality interactions and transformations in a sensorimotor circuit. eLife.
Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CHyuk, Yu S, Kim JS et al..  2023.  A leaky integrate-and-fire computational model based on the connectome of the entire adult Drosophila brain reveals insights into sensorimotor processing. bioRxiv.
Shirangi TR, Wong AM, Truman JW, Stern DL.  2016.  Doublesex regulates the connectivity of a neural circuit controlling Drosophila male courtship song.. Developmental Cell. 37(6):533-44.
Shirangi TR, McKeown M.  2007.  Sex in flies: what ’body–mind’ dichotomy? Developmental Biology. 306(1):10-9.
Shirangi TR, Stern DL, Truman JW.  2013.  Motor control of Drosophila courtship song.. Cell Reports. 5:678-86.
Shirangi TR, Zaika A, Moll UM.  2002.  Nuclear degradation of p53 occurs during down-regulation of the p53 response after DNA damage.. The FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology. 16:420-2.
Shirangi TR, Dufour H\"ıseD, Williams TM, Carroll SB.  2009.  Rapid evolution of sex pheromone-producing enzyme expression in Drosophila.. PLoS Biology. 7(8):e1000168.
Shirangi TR, Taylor BJ, McKeown M.  2006.  A double-switch system regulates male courtship behavior in male and female Drosophila melanogaster.. Nature Genetics. 38(12):1435-9.
Shiozaki HM, Wang K, Lillvis JL, Xu M, Dickson BJ, Stern DL.  2023.  Combinatorial circuit dynamics orchestrate flexible motor patterns in Drosophila.. bioRxiv.
Shiozaki HM, Wang K, Lillvis JL, Xu M, Dickson BJ, Stern DL.  2022.  Neural coding of distinct motor patterns during Drosophila courtship song. bioRxiv.
Shinomiya K, Ito M.  2017.  Recent progress in the 3D reconstruction of Drosophila neural circuits.. Decoding Neural Circuit Structure and Function. :63-89.
Shinomiya K, Nern A, Meinertzhagen IA, Plaza SM, Reiser MB.  2022.  Neuronal circuits integrating visual motion information in Drosophila melanogaster.. Current Biology. 32(16):3529-3544.
Shinomiya K, Horne JAnne, McLin S, Wiederman M, Nern A, Plaza SM, Meinertzhagen IA.  2019.  The organization of the second optic chiasm of the optic lobe.. Frontiers in Neural Circuits. 13:65.
Shinomiya K, Takemura S-ya, Rivlin PK, Plaza SM, Scheffer LK, Meinertzhagen IA.  2015.  A common evolutionary origin for the ON- and OFF-edge motion detection pathways of the Drosophila visual system.. Frontiers in Neural Circuits. 9:33.
Shinomiya K, Huang G, Lu Z, Parag T, C Xu S, Aniceto R, Ansari N, Cheatham N, Lauchie S, Neace E et al..  2019.  Comparisons between the ON- and OFF-edge motion pathways in the brain.. eLife. 8
Shingleton AW, Das J, Vinicius L, Stern DL.  2005.  The temporal requirements for insulin signaling during development in Drosophila.. PLoS Biol. 3(9):e289.