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Jayaraman V, Laurent G.  2007.  Evaluating a genetically encoded optical sensor of neural activity using electrophysiology in intact adult fruit flies.. Frontiers in Neural Circuits. 1:3.
Jayaraman V.  2012.  Visual neuroscience: a moving story of neuromodulation.. Current Biology. 22(24):R1057-9.
Jayakumar S, Richhariya S, O Reddy V, Texada MJ, Hasan G.  2016.  Drosophila larval to pupal switch under nutrient stress requires IP3R/Ca(2+) signalling in glutamatergic interneurons.. eLife. 5
Jasper LA, Wang MC.  2024.  Cutting through stress.. Nature Metabolism.
Jasek S, Verasztó C, Brodrick E, Shahidi R, Kazimiers T, Kerbl A, Jékely G.  2022.  Desmosomal connectomics of all somatic muscles in an annelid larva.. eLife. 11
Jarsky T, Mady R, Kennedy B, Spruston N.  2008.  Distribution of bursting neurons in the CA1 region and the subiculum of the rat hippocampus.. Journal of Comparative Neurology. 506(4):535-47.
Jarsky T, Roxin A, Kath WL, Spruston N.  2005.  Conditional dendritic spike propagation following distal synaptic activation of hippocampal CA1 pyramidal neurons.. Nat Neurosci. 8(12):1667-76.
Jarsky T, Cembrowski M, Logan SM, Kath WL, Riecke H, Demb JB, Singer JH.  2011.  A synaptic mechanism for retinal adaptation to luminance and contrast.. Journal of Neuroscience. 31(30):11003-15.
Jambor H, Surendranath V, Kalinka AT, Mejstrik P, Saalfeld S, Tomancak P.  2015.  Systematic imaging reveals features and changing localization of mRNAs in Drosophila development.. Elife. 4
Jain V, Turaga S, Briggman K, Helmstaedter MN, Denk W, Seung S.  2011.  Learning to agglomerate superpixel hierarchies.. Neural Information Processing Systems. 24:648-56.
Jain V, Murray JF, Roth F, Turaga S, Zhigulin V, Briggman KL, Helmstaedter MN, Denk W, H Seung S.  2007.  Supervised learning of image restoration with convolutional networks.. IEEE 11th International Conference on Computer Vision. 2:1-8.
Jain V., Murray J.F., Roth F., Turaga S., Zhigulin V., Briggman K.L., Helmstaedter M.N., Denk W., Seung H.S..  2007.  Supervised Learning of Image Restoration with Convolutional Networks. IEEE 11th International Conference on Computer Vision, 2007. ICCV 2007.
Jain V, Saul LK.  2004.  Exploratory analysis and visualization of speech and music by locally linear embedding.. International Conference on Speech, Acoustics, and Signal Processing. 3:iii-984-7.
Jain V, Bollmann B, Richardson M, Berger DR, Helmstaedter MN, Briggman KL, Denk W, Bowden JB, Mendenhall JM, Abraham WC et al..  2010.  Boundary learning by optimization with topological constraints.. IEEE Conference on Computer Vision and Pattern Recognition.
Jain V, Turaga SC, Briggman K, Helmstaedter MN, Denk W, Seung H.S.  2011.  Learning to Agglomerate Superpixel Hierarchies. Advances in Neural Information Processing Systems 24 (NIPS 2011). 24
Jain V, H Seung S.  2008.  Natural image denoising with convolutional networks.. Neural Information Processing Systems.
Jain V, Seung HSebastian, Turaga SC.  2010.  Machines that learn to segment images: a crucial technology for connectomics.. Current Opinion in Neurobiology. 20(5):653-66.
Jain V.  2009.  Machine learning of image analysis with convolutional networks and topological constraints..
Jain V, Zhigulin V, Seung HSebastian.  2005.  Representing part-whole relationships in recurrent neural networks.. Neural Information Processing Systems. 18:563-70.
Jain A, Ulman V, Mukherjee A, Prakash M, Pimpale L, Munster S, Panfilio KA, Jug F, Grill SWA, Tomancak P et al..  2019.  Regionalized tissue fluidization by an actomyosin cable is required for epithelial gap closure during insect gastrulation.. Nature Communications. 11(1):5604.
Jaensch S, Decker M, Hyman AA, Myers EW.  2010.  Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos.. Bioinformatics. 26(12):i13-20.
Jacquet Ade Rus, Tancredi JL, Lemire AL, DeSantis MC, Li W-P, O’Shea EK.  2021.  The LRRK2 G2019S mutation alters astrocyte-to-neuron communication via extracellular vesicles and induces neuron atrophy in a human iPSC-derived model of Parkinson’s disease. eLife.
A Jacquet deRus, Alpaugh M, Denis HL, Tancredi JL, Boutin M, Decaestecker J, Beauparlant C, Herrmann L, Saint-Pierre M, Parent M et al..  2023.  The contribution of inflammatory astrocytes to BBB impairments in a brain-chip model of Parkinson's disease.. Nature Communications. 14(1):3651.
Jacquet Ade Rus.  2019.  Preparation and co-culture of iPSC-derived dopaminergic neurons and astrocytes.. Current Protocols in Cell Biology. 85(1):e98.
Jacobs DS, Allen MC, Park J, Moghaddam B.  2022.  Learning of probabilistic punishment as a model of anxiety produces changes in action but not punisher encoding in the dmPFC and VTA.. eLife. 11